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AI-summarized plant biology research papers from bioRxiv

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A structured RNA balances DEAD-box RNA helicase function in plant alternative splicing control

Authors: Burgardt, R., Bauer, J., Reinhardt, M., Rupp, N., Engel, C., Hellmann, S. L., Sack, M., Weinberg, Z., Wachter, A.

Date: 2026-01-24 · Version: 1
DOI: 10.64898/2026.01.23.701338

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study characterizes a conserved RNA structural element called DEAD in DEAD-box helicase genes of land plants, showing it acts as a sensor that modulates alternative splicing of DRH1 and its paralog in Arabidopsis thaliana. By opening the structure, splicing shifts toward non‑coding isoforms, creating a negative feedback loop that balances helicase transcript and protein levels, while its disruption leads to widespread splicing defects and severe stress phenotypes.

RNA secondary structure alternative splicing DEAD-box helicase negative feedback loop Arabidopsis thaliana

Arabidopsis GLK transcription factors interact with ABI4 to modulate cotyledon greening in light-exposed etiolated seedlings

Authors: Yu, P., Saga, F., Baeumers, M., Hoecker, U.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.701071

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reveals that transcription factors GLK1/GLK2 and ABI4 antagonistically regulate protochlorophyllide accumulation during seedling etiolation, where loss of ABI4 or GLK2 overexpression leads to excess Pchlide, inefficient photoreduction, elevated singlet oxygen, and reduced seedling survival upon light exposure. ABI4 suppresses GLK activity via physical interaction rather than transcriptional control, preventing photodamage in dark-grown seedlings.

GLK1 GLK2 ABI4 protochlorophyllide singlet oxygen

PDLP5 regulates aquaporin-mediated hydrogen peroxide transport in Arabidopsis

Authors: Li, Z., Liu, S.-L., Islam, S., Clements, M., Chen, Y., Aung, K.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.21.700913

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that the plasmodesmata‑located protein PDLP5 negatively regulates plasma membrane intrinsic protein (PIP)‑mediated hydrogen peroxide transport in Arabidopsis by forming extracellular complexes with PIPs, notably PIP2;5. Overexpression of PDLP5 reduces H2O2 uptake and mitigates H2O2‑induced root growth inhibition, while loss‑of‑function mutants show increased sensitivity, revealing a novel extracellular mechanism of aquaporin regulation.

aquaporins PIP2;5 PDLP5 hydrogen peroxide transport plasmodesmata

Larval antibiosis to cabbage stem flea beetle (Psylliodes chrysocephala) is absent within oilseed rape (Brassica napus)

Authors: Brock, R. E., Courtney, C., Penfield, S., Wells, R.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.694425

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study characterized cabbage stem flea beetle (CSFB) larval development and assessed antibiosis across a diverse Brassica panel, finding no larval resistance within Brassica napus but consistent antibiosis in Sinapis alba. It also demonstrated that Brassica rapa and Arabidopsis thaliana can serve as suitable hosts for CSFB, enabling future genetic studies of resistance. The results suggest using Brassica relatives to explore CSFB resistance genetics for breeding oilseed rape.

cabbage stem flea beetle Brassica napus antibiosis larval development resistance screening

Efficient transgene-free multiplexed genome editing via viral delivery of an engineered TnpB.

Authors: Weiss, T., Kamalu, M., Shi, H., Wirnowski, G., Ingelsson, A., Amerasekera, J., Vohra, K., Trinidad, M. I., Li, Z., Freitas, E., Steinmetz, N., Ambrose, C., Chen, K., Doudna, J. A., Jacobsen, S. E.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.23.700382

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study enhances virus-induced genome editing (VIGE) by introducing a multiplexed guide RNA system and an engineered high‑activity Ymu1 variant (Ymu1‑WFR) delivered via Tobacco Rattle Virus, enabling efficient, transgene‑free, and heritable multiplex editing. This approach builds on prior transgene‑free VIGE in Arabidopsis using ISYmu1 TnpB and expands its utility for single‑locus and multiplex genome modifications.

virus-induced genome editing TnpB Tobacco Rattle Virus multiplexed editing Arabidopsis

A pistil peptide toxin-pollen antidote system for reproductive barrier

Authors: Miura, H., Hirano, K., Nagae, T. T., Kato, Y., Sasaki, T., Shirasawa, K., Sakuraba, S., Matsuura, T., Soneda, S., Takayama, S., Fujii, S.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.701211

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identifies a cysteine‑rich peptide, FEM, secreted by Arabidopsis thaliana stylar tissues that blocks heterospecific pollen tube elongation, functioning independently of the known barrier component SPRI1. A neighboring pollen‑expressed protein, HOM, interacts with FEM to neutralize its effect, forming a toxin‑antidote system that contributes to multilayered prezygotic reproductive isolation.

prezygotic reproductive barrier cysteine‑rich peptide FEM peptide HOM protein toxin‑antidote system

The parasitic plant Phtheirospermum japonicum suppresses host immunity

Authors: Bhukya, D. P. N., Spallek, T.

Date: 2026-01-22 · Version: 1
DOI: 10.64898/2026.01.20.700512

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study shows that invasion of the host root xylem by the parasitic plant Phtheirospermum japonicum induces a phosphate‑starvation response in Arabidopsis thaliana, leading to systemic suppression of immunity. Consequently, infested plants become more susceptible to secondary microbial infections, highlighting the importance of multitrophic interactions in crop resilience.

Phtheirospermum japonicum phosphate starvation response immune suppression xylem invasion multitrophic interactions

Microtubules in Arabidopsis pollen tubes are oriented away from the tube apex and are actin-independent at the cortex

Authors: Coomey, J. H., Gallup, E. R., Dixit, R.

Date: 2026-01-22 · Version: 1
DOI: 10.64898/2026.01.21.700958

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

Live-cell imaging of Arabidopsis thaliana pollen tubes co-expressing fluorescent tubulin and actin markers revealed partial co‑localization of the two cytoskeletal systems and demonstrated that microtubule organization depends on actin in a spatially specific manner. Disruption of actin, but not microtubules, perturbs medial microtubules, while EB1b tracking shows a largely parallel microtubule array with plus ends oriented away from the tube apex.

pollen tube actin cytoskeleton microtubules EB1b Arabidopsis thaliana

Comprehensive characterisation of IAA inactivation pathways reveals the impact of glycosylation on auxin metabolism and plant development

Authors: Casanova-Saez, R., Pencik, A., Brunoni, F., Ament, A., Hladik, P., Zukauskaitee, A., Simura, J., Novak, O., Voss, U., Bennett, M. J., Ljung, K., Mateo Bonmati, E.

Date: 2026-01-21 · Version: 1
DOI: 10.64898/2026.01.19.700167

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The authors created combinatorial mutants of group II GH3s, DAO1/DAO2, and key UGTs to dissect indole‑3‑acetic acid (IAA) inactivation pathways, using ^13C6‑IAA feeding to trace metabolic flux. Their results show that DAO enzymes act downstream of GH3s and that UGT‑mediated IAA glycosylation plays a larger role in regulating IAA levels and development than previously recognized, while residual GH3 activity and unidentified pathways may contribute to phenotypes such as early flowering via FLC down‑regulation.

IAA inactivation DAO1/DAO2 GH3 amido synthetases UDP‑glycosyltransferases Arabidopsis thaliana

Two-step polar plastid migration via F-actin and microtubules ensures unequal inheritance during asymmetric division of Arabidopsis zygote

Authors: Tada, K., Matsumoto, H., Oi, T., Kang, Z., Nonoyama, T., Tsugawa, S., Kimata, Y., Kusano, S., Hagihara, S., Ichikawa, S., Kodama, Y., Ueda, M.

Date: 2026-01-20 · Version: 1
DOI: 10.64898/2026.01.19.697633

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

Using quantitative live‑cell imaging in Arabidopsis thaliana zygotes, the authors show that plastids migrate apically in two stages: initially together with the nucleus along F‑actin, then via microtubule‑driven movement after nuclear migration slows, resulting in unequal plastid inheritance. Plastid migration is independent of starch but requires a fertilization‑activated MAP kinase pathway, revealing a spatiotemporal regulatory mechanism at the onset of plant development.

plastid migration Arabidopsis thaliana actin filaments microtubules MAP kinase pathway
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