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AI-summarized plant biology research papers from bioRxiv

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Latest 14 Papers

Larval antibiosis to cabbage stem flea beetle (Psylliodes chrysocephala) is absent within oilseed rape (Brassica napus)

Authors: Brock, R. E., Courtney, C., Penfield, S., Wells, R.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.694425

Category: Plant Biology

Model Organism: Brassica napus

AI Summary

The study tracked cabbage stem flea beetle larval development and established a semi‑high‑throughput assay to phenotype antibiosis across 98 Brassica genotypes, finding little genotype effect in Brassica napus but strong antibiosis in Sinapis alba. Larvae also successfully developed on Brassica rapa and Arabidopsis thaliana, suggesting these relatives can be used to explore resistance genetics for future breeding.

cabbage stem flea beetle Brassica napus antibiosis larval development resistance phenotyping

Network analysis of flowering time genes suggests regulatory changes among SOC1 orthologues in response to cold in Brassica napus

Authors: Sidhu, G. S., Burrows, S., Woolfenden, H., Wells, R., Morris, R. J.

Date: 2026-01-20 · Version: 2
DOI: 10.64898/2025.12.16.694548

Category: Plant Biology

Model Organism: Brassica napus

AI Summary

The study investigates the gene regulatory network (GRN) controlling flowering time in the allotetraploid crop Brassica napus by comparing its transcriptome to that of Arabidopsis thaliana. While most orthologous gene pairs show conserved expression dynamics, several flowering‑time genes display regulatory divergence, especially under cold conditions, indicating subfunctionalisation among paralogues. Despite these differences, the overall GRN topology remains similar to Arabidopsis, likely due to retention of multiple paralogues.

flowering time gene regulatory network comparative transcriptomics Brassica napus subfunctionalisation

Kinetic 13CO2 mapping revealed distinct light-dark metabolic transition phenotypes in Brassica napus seedlings under visible and UV-B light

Authors: Thakur, Y., Lingwan, M., Pant, Y., Masakapalli, S. K.

Date: 2025-12-07 · Version: 1
DOI: 10.64898/2025.12.03.692083

Category: Plant Biology

Model Organism: Brassica napus

AI Summary

Using kinetic 13CO2 labeling and GC‑MS, the study examined how visible and UV‑B light affect carbon assimilation and partitioning during the day‑night transition in Brassica napus seedlings. Visible light promoted dynamic redistribution and de novo synthesis of shikimic acid, TCA cycle and glutamate‑GABA metabolites in the dark, whereas UV‑B caused a delayed photosynthetic response and shifted synthesis toward sucrose and select organic acids later in the light period. These results reveal that light quality and photoperiod drive distinct metabolic phenotypes.

13CO2 stable isotope tracing light quality (visible vs UV-B) carbon assimilation metabolic partitioning Brassica napus

Associative transcriptomics in Brassica napus suggests a role for Arabidopsis Response Regulator orthologs in seedling vigour

Authors: Siles, L., Menard, G. N., Wells, R., Zoclanclounon, A., Eastmond, P. J., Kurup, S.

Date: 2025-12-05 · Version: 1
DOI: 10.64898/2025.12.03.692010

Category: Plant Biology

Model Organism: Brassica napus

AI Summary

The study used a Brassica napus diversity panel to phenotype multiple seedling establishment traits in soil and applied associative transcriptomics to uncover genetic factors influencing post‑germinative vigor. Gene expression markers linked to cytokinin signaling and photomorphogenesis, including ARR4/5, SPA1, ASG7, and PRR7 orthologues, were significantly associated with traits such as emergence time and leaf development, highlighting a complex regulatory network controlling seedling vigor.

seedling vigour Brassica napus associative transcriptomics cytokinin signaling photomorphogenesis

Integrative epigenomic analysis uncovers asymmetry of enhancer activity in Brassica napus

Authors: Zanini, S. F., Rockenbach, K., Nguyen, A., Arslan, K., Yildiz, G., Snowdon, R., Golicz, A. A.

Date: 2025-10-31 · Version: 1
DOI: 10.1101/2025.10.31.685802

Category: Plant Biology

Model Organism: Brassica napus

AI Summary

The study mapped the cis‑regulatory landscape of the winter rapeseed cultivar Express617, identifying thousands of novel regulatory elements and characterizing super‑enhancers that are asymmetrically enriched in the Cn subgenome of Brassica napus. An in‑silico pipeline combining population‑level expression data and machine‑learning models revealed that many SE‑associated genes are expressed above predicted levels, and structural variants disrupting SEs lead to reduced gene expression, highlighting their functional importance for gene regulation and breeding.

cis-regulatory elements super-enhancers Brassica napus chromatin accessibility DNA methylation

A simplified MiMe for producing clonal gametes to enable synthetic apomixis in allotetraploid Brassica napus

Authors: Geng, M., Chu, L., Guo, Z., Zhang, Y., Yang, C.

Date: 2025-10-23 · Version: 1
DOI: 10.1101/2025.10.22.684060

Category: Plant Biology

Model Organism: Brassica napus

AI Summary

The study demonstrates that mutating just two genes in the allotetraploid oil crop Brassica napus can convert meiosis into a mitosis-like division, yielding over 95% viable clonal gametes and establishing a simplified MiMe system for synthetic apomixis in polyploids. This approach circumvents the need to inactivate three genes as required in diploid species, facilitating apomictic breeding in polyploid crops.

synthetic apomixis MiMe clonal gametes Brassica napus polyploid gene editing

Conserved 'late' effector genes from Leptosphaeria maculans inducing gene-for-gene quantitative resistance in Brassica napus semi-winter genotypes

Authors: Rabeau, C., Wagner, A., Lapalu, N., Jiquel, A., Faure, S., Fudal, I.

Date: 2025-09-23 · Version: 1
DOI: 10.1101/2025.09.22.677120

Category: Plant Biology

Model Organism: Brassica napus

AI Summary

The study investigates late‑stage effector genes of the fungus Leptosphaeria maculans, which infects Brassica napus, to determine whether they are more genomically conserved than early effectors and thus could provide more durable plant resistance. Six candidate late effectors were screened against an expanded set of semi‑winter B. napus genotypes, revealing new resistance sources primarily within this genetic pool, supporting the hypothesis that late effectors are more stable and valuable for breeding resistant cultivars.

Leptosphaeria maculans Brassica napus late effector genes quantitative resistance semi-winter genotypes

Hijacking host microPEP: pathogens modulate the microRNA-microPEP loop to promote infection

Authors: Clostres, E., Penno, C., El Amrani, A., Daburon, V., GAZENGEL, K., Monard, C., DAVAL, S.

Date: 2025-08-02 · Version: 1
DOI: 10.1101/2025.08.01.668066

Category: Plant Biology

Model Organism: Brassica napus

AI Summary

The study reveals that the pathogen Plasmodiophora brassicae produces short peptides (pathoPEPs) that mimic host microPEPs, influencing host microRNA expression and downstream gene regulation in Brassica napus. Inverse expression patterns between pathoPEPs and their target miRNAs were linked to infection levels, affecting genes in auxin signaling, immunity, root development, and carbohydrate metabolism. This computational analysis provides the first evidence of pathogen‑derived miPEP‑like peptides hijacking plant post‑transcriptional regulatory pathways.

pathoPEPs microRNA regulation Brassica napus Plasmodiophora brassicae auxin signaling

Resolving cofactor imbalance in triacylglycerol biosynthesis in oilseeds through glycolytic shunts: a modeling study

Authors: Schwender, J.

Date: 2025-08-02 · Version: 1
DOI: 10.1101/2025.07.31.667993

Category: Plant Biology

Model Organism: Brassica napus

AI Summary

The study assesses a minimal stoichiometric model of carbohydrate‑to‑triacylglycerol conversion in developing seeds and finds that glycolysis and the oxidative pentose phosphate pathway alone cause NADH overproduction, leading to cofactor imbalance. Inclusion of glycolytic bypasses such as the malate shunt, the oxidative RubisCO shunt, or an NADPH‑producing GAPDH variant restores balance and requires mitochondrial oxidative phosphorylation. Large‑scale modeling of Brassica napus seeds predicts that the use of these bypasses increases with seed oil content, facilitating high lipid biosynthetic fluxes.

carbohydrate-to-TAG conversion glycolytic bypasses RubisCO shunt malate shunt cofactor balancing

Sequential cold and heat stresses establish an intergenerational stress memory in rapeseed (Brassica napus L.)

Authors: Cagli, I., Gazdagli Talay, A., Halik, M. B., Tunali, F., Sonmez, C.

Date: 2025-07-27 · Version: 1
DOI: 10.1101/2025.07.24.666528

Category: Plant Biology

Model Organism: Brassica napus

AI Summary

The study examined whether early cold exposure primes rapeseed (Brassica napus) seedlings for improved heat tolerance and if this priming is transmitted to the next generation. Sequential cold‑heat stress enhanced physiological and biochemical defenses in both the treated plants and their progeny, including elevated phenolics, flavonoids, antioxidant activity, and altered expression of fatty acid metabolism genes, indicating intergenerational stress memory.

cold priming heat tolerance intergenerational stress memory fatty acid metabolism rapeseed
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