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AI-summarized plant biology research papers from bioRxiv

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Latest 35 Papers

Targeting of the barley cell-surface receptor SRF3 by the Blumeria hordei effector AVRA13 overlaps with AVRA13 recognition by MLA and the induction of NLR-mediated cell death.

Authors: Shi, W., Bilstein-Schloemer, M., Stolze, S. C., Platre, M. P., Hofmann, M., Doehlemann, G., Nakagami, H., Saur, I. M.

Date: 2026-01-09 · Version: 1
DOI: 10.64898/2026.01.08.698370

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study used proximity-dependent labeling in transgenic barley to map host interactomes of five structurally related Blumeria hordei AVRA effectors, revealing that the conserved AVRA13 specifically binds the barley cell‑surface receptor SRF3 and disrupts its interaction with BAK1, reducing plasma‑membrane SRF3 levels. This manipulation impairs iron‑induced restriction of fungal growth, linking SRF3‑mediated iron homeostasis to pathogen virulence and immune recognition.

AVRA13 SRF3 iron homeostasis barley immunity effector interactome

Leaf variegation in a barley EMS mutant is controlled by two epistatic mutations

Authors: Pidon, H., Nagireddy, S. R., Melzer, M., Himmelbach, A., Stein, N.

Date: 2025-12-16 · Version: 1
DOI: 10.64898/2025.12.15.694392

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study characterizes a novel variegated barley mutant whose phenotype is governed by duplicate dominant epistasis, representing the first reported digenic control of chloroplast-deficient mutants. Mapping and whole‑genome resequencing identified two candidate genes—an NBR1‑like autophagy receptor and a DNAJ‑domain protein—implicated in chloroplast proteostasis. The authors propose that combined mild defects in proteostasis from each locus exceed a functional threshold, disrupting early chloroplast development while allowing later recovery.

variegation chloroplast biogenesis digenic control proteostasis whole-genome resequencing

Network Inference Reveals Distinct Transcriptional Regulation in Barley against Drought and Fusarium Head Blight

Authors: Steidele, C. E., Kersting, J., Hoheneder, F., List, M., Hueckelhoven, R.

Date: 2025-12-09 · Version: 1
DOI: 10.64898/2025.12.09.693163

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study combined Weighted Gene Correlation Network Analysis and GENIE3 to map transcriptional networks in barley responding to Fusarium head blight and drought, revealing overlapping co‑expression modules and regulatory clusters. Central regulatory roles were assigned to specific transcription factors, notably WRKYs for Fusarium response, while bHLH and NAC family members showed stress‑specific activity, highlighting candidates for functional validation.

Barley Fusarium head blight drought stress gene regulatory network WRKY transcription factor

Barley C2-Domain Abscisic Acid-Related protein CARa supports susceptibility to Blumeria hordei and localizes to the extrahaustorial membrane

Authors: Bradai, M., McCollum, C., Huckelhoven, R.

Date: 2025-12-05 · Version: 1
DOI: 10.64898/2025.12.04.692366

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study reveals that the barley ROP protein RACB, which facilitates susceptibility to the powdery mildew fungus Blumeria hordei, signals through the scaffold RIPb, and that the C2‑domain protein CARa interacts with RIPb to promote fungal haustorium accommodation. Transient knockdown of CARa reduces, while overexpression enhances, barley epidermal cell susceptibility, indicating CARa links RACB‑RIPb signaling to membrane organization during infection.

RACB CARa Blumeria hordei Hordeum vulgare ROP signaling

Pre-anthesis light signaling of sheathed embryonic barley inflorescences defines floral fate

Authors: Babanna, S. T., Huang, Y., P.M. Weber, A., Schnurbusch, T.

Date: 2025-12-02 · Version: 1
DOI: 10.64898/2025.12.01.691580

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study characterizes pre‑anthesis embryonic inflorescence greening (PEIG) in barley, showing it begins early in development within leaf sheaths, first in the central rachis and later spreading to spikelet primordia. Dark treatment experiments reveal that while PEIG is not required for floral initiation, it is essential for floral survival and pollen viability, especially at the inflorescence tip. Natural variation analysis links higher PEIG levels with improved floral survival, suggesting this light‑dependent trait could be leveraged to boost cereal grain yield.

pre‑anthesis embryonic inflorescence greening chlorophyll accumulation floral survival pollen viability Barley

Transcriptome and hormone regulations shape drought stress-dependent Fusarium Head Blight susceptibility in different barley genotypes

Authors: Hoheneder, F., Steidele, C. E., Gigl, M., Dawid, C., Hueckelhoven, R.

Date: 2025-11-25 · Version: 1
DOI: 10.1101/2025.11.23.689882

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The authors evaluated four barley (Hordeum vulgare) genotypes under simultaneous Fusarium culmorum infection and drought, revealing genotype‑dependent Fusarium Head Blight severity and largely additive transcriptional responses dominated by drought at later stages. Co‑expression analysis linked abscisic acid and auxin pathways to stress‑specific gene modules, and a regression model accurately predicted combined‑stress expression from single‑stress data, indicating modular regulation.

Barley Fusarium Head Blight Drought stress Transcriptome analysis Abscisic acid

FLOWERING LOCUS T1 is a pleiotropic regulator of reproductive development, plant longevity, and source-sink relations in barley

Authors: Helmsorig, G., Lan, T., Haraldsson, E. B., Ruetjes, T., Westhoff, P., Weber, K., Kumlehn, J., Hensel, G., Simon, R., von Korff, M.

Date: 2025-11-10 · Version: 1
DOI: 10.1101/2025.11.07.687273

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study demonstrates that the barley florigen homolog FT1 integrates leaf and inflorescence development with metabolic regulation, influencing source‑sink dynamics, plant longevity, and reproductive output. ft1 knock‑out mutants show altered meristem determinacy, increased leaf and spikelet numbers, reduced fertility, and extensive transcriptional changes in photosynthesis and carbon metabolism, indicating reduced sink strength despite high carbohydrate accumulation.

FT1 source-sink interaction Hordeum vulgare meristem development plant longevity

Barley (Hordeum vulgare) maintains tricarboxylic acid cycle activity without invoking the GABA shunt under salt stress

Authors: Bandehagh, A., Taylor, N. L.

Date: 2025-11-08 · Version: 1
DOI: 10.1101/2025.11.06.687118

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

Using physiological, biochemical, metabolomic, and proteomic analyses, the study shows that barley responds to salinity stress by increasing respiration and activating the canonical TCA cycle, while the GABA shunt remains largely inactive. Elevated levels of TCA enzymes and related metabolites indicate that enhanced mitochondrial respiration underpins barley’s salinity tolerance, contrasting with wheat where the GABA pathway is induced.

salinity stress mitochondrial respiration tricarboxylic acid cycle barley proteomics

A subset of world barley collection was used in the identification of sources of resistance and marker-trait association for resistance for bacterial leaf streak

Authors: Velasco, D. D. P., Shi, G., Brueggeman, R. S., Horsley, R. D., Liu, Z., Baldwin, T. T.

Date: 2025-11-03 · Version: 1
DOI: 10.1101/2025.10.31.685662

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study evaluated 198 barley (Hordeum vulgare) accessions from the World Barley Core Collection for resistance to bacterial leaf streak caused by Xanthomonas translucens pv. translucens, identifying ten lines with consistently low disease severity over four years. Genome‑wide association analyses using multiple mixed models uncovered five robust marker‑trait associations, including loci on chromosomes 2H, 5H, and 7H that overlap with previously reported resistance regions, providing valuable resources for breeding BLS‑resistant barley.

bacterial leaf streak Xanthomonas translucens barley genome‑wide association study marker‑trait association

Golden Promise-rapid, a fast-cycling barley genotype with high transformation efficiency

Authors: Buchmann, G., Haraldsson, E. B., Schüller, R., Rütjes, T., Walla, A. A., von Korff Schmising, M., Liu, S.

Date: 2025-10-31 · Version: 1
DOI: 10.1101/2025.10.31.685778

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study created a fast‑cycling, isogenic barley line (GP‑rapid) that retains the high transformation efficiency of the Golden Promise cultivar by introgressing a wild‑type Ppd‑H1 allele and removing residual Igri genome. Under speed‑breeding conditions, GP‑rapid shortens the generation time by 25% (63 days) and demonstrates comparable CRISPR/Cas9‑mediated editing efficiency to the original cultivar.

barley Golden Promise fast‑cycling genotype Ppd‑H1 CRISPR/Cas9
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