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AI-summarized plant biology research papers from bioRxiv

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Latest 34 Papers

Evaluation of combined root exudate and rhizosphere microbiota sampling approaches to elucidate plant-soil-microbe interaction

Authors: Escudero-Martinez, C., Browne, E. Y., Schwalm, H., Santangeli, M., Brown, M., Brown, L., Roberts, D. M., Duff, A. M., Morris, J., Hedley, P. E., Thorpe, P., Abbott, J. C., Brennan, F., Bulgarelli, D., George, T. S., Oburger, E.

Date: 2025-10-24 · Version: 1
DOI: 10.1101/2025.10.23.683011

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study benchmarked several sampling approaches for simultaneous root exudate and rhizosphere microbiota profiling in soil‑grown barley, showing consistent exudate profiles but variable root morphology and nitrogen exudation across methods. High‑throughput amplicon sequencing revealed protocol‑specific effects on microbial composition, yet about 75% of enriched microbes were recovered by all approaches, supporting integrated exudate‑microbiota analyses.

root exudates rhizosphere microbiota sampling methods Hordeum vulgare high-throughput sequencing

High doses of fine biochar in sandy subsoils increase water retention, but also cause first-year yield depressions for drought-stressed barley

Authors: Bruun, E. W., Petersen, C., Iturbe-Espinoza, P., Winding, A., Muller-Stover, D.

Date: 2025-10-10 · Version: 1
DOI: 10.1101/2025.10.09.681326

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

Incorporating fine-grained biochar into coarse sandy subsoils increased water retention but caused initial nitrogen immobilization that reduced spring barley growth and yield in the first year; by the second year, effects were neutral to positive after winter irrigation. Root density declined with higher biochar rates, likely due to elevated potassium, while rooting depth remained unchanged. Long‑term trials are needed to optimize nutrient management and application methods.

biochar water retention nitrogen immobilization spring barley sandy subsoil

AMF primes immune genes against Puccinia hordei (Brown rust) in Hordeum vulgare but does not reduce pathogen burden

Authors: Moulton-Brown, C. E., Brzezinska, K., Orosa-Puente, B. E., Helgason, T.

Date: 2025-09-17 · Version: 1
DOI: 10.1101/2025.09.16.676302

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study shows that colonization of barley (Hordeum vulgare) roots by the arbuscular mycorrhizal fungus Rhizophagus irregularis primes the plant's immune system against the leaf rust pathogen Puccinia hordei, leading to heightened expression of defence genes without reducing disease severity. Transcriptome analysis revealed AMF‑induced reprogramming of leaf gene expression and modulation of protein ubiquitination, indicating transcriptional and post‑translational mechanisms underlying mycorrhiza‑induced resistance.

Hordeum vulgare Puccinia hordei Rhizophagus irregularis mycorrhiza-induced resistance defence priming

Multi-omics of barley Fusarium Head Blight converge on pathogen-triggered biosynthesis of aromatic amino acid derived chemical defense compounds

Authors: Hein, S., Steidele, C. E., Hoheneder, F., Brajkovic, S., Kuster, B., Kurzweil, L., Stark, T. D., Dawid, C., Huckelhoven, R.

Date: 2025-09-12 · Version: 1
DOI: 10.1101/2025.09.08.674812

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study used integrated transcriptomic, proteomic, and metabolomic analyses to characterize barley (Hordeum vulgare) head defenses against Fusarium culmorum infection. It identified coordinated up‑regulation of gene‑protein pairs linked to aromatic amino‑acid‑derived secondary metabolites, including tryptamine, serotonin, hordatines, and related hydroxycinnamylamides, which constitute a consistent resistance response across barley varieties.

Fusarium head blight multiomics barley defense metabolites aromatic amino acid metabolism hordatines

From Photoperiod Thresholds to Photoperiod sensitivity: Dual Strategies for Cost-Effective Speed Breeding and Climate-Ready Barley

Authors: Rossi, N., Powell, W., Halliday, K., Sharma, R.

Date: 2025-09-07 · Version: 1
DOI: 10.1101/2025.09.04.674238

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study investigates how allelic variation at barley flowering‑time genes PPD‑H1, ELF3, and PHYC influences threshold photoperiod, photoperiod sensitivity, and intrinsic earliness, identifying a 20‑h threshold for PPD‑H1 lines and proposing shorter photoperiods for speed breeding. Findings suggest that specific alleles (ELF3 and PhyC‑e) can reduce energy costs of speed breeding and enhance climate‑resilient adaptation by shortening the growing season.

flowering time photoperiod response speed breeding barley

The functional divergence of plant ESCRT components TOL3, SNF7.1, and VPS4 during salt stress response

Authors: Schnurer, M., Schweighofer, A., Hilscher, J., Kapusi, E., Korbei, B., Naegele, T., Kang, L., Fuhrmann, P., Danninger, S., Scharl, L., Bock, A., Marino, G., Leister, D., Ibl, V.

Date: 2025-09-07 · Version: 1
DOI: 10.1101/2025.09.06.674610

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study investigates the role of ESCRT-mediated protein trafficking in barley (Hordeum vulgare) under high salinity, revealing that HvSNF7.1 and HvVPS4 act as key modulators of the stress response. Functional analyses of ESCRT-0-like TOL proteins demonstrate their essential contribution to salt tolerance, with loss-of-function mutants showing severe developmental defects in both barley and Arabidopsis.

salinity stress ESCRT trafficking Hordeum vulgare TOL proteins proteomic analysis

Pan-genome Analysis Reveals Hidden Diversity and Selection Signatures of Auxin Response Factors (ARFs) Associated with Breeding in Barley

Authors: Tan, K., Guo, Z., Schnurbusch, T.

Date: 2025-08-13 · Version: 1
DOI: 10.1101/2025.08.12.669851

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study performed a genome‑wide analysis of auxin response factor (ARF) genes across a 76‑accession barley pan‑genome, identifying 1,911 ARF copies and integrating presence/absence variation, copy‑number variation, phylogeny, expression profiling, transposable‑element regulation, and selection signatures. It revealed lineage‑specific expansion, especially in the HvARF13 clade, and identified a selected HvARF3 haplotype associated with increased grain size and weight, demonstrating the power of multi‑omics pan‑genome approaches for gene‑trait discovery in barley.

Auxin Response Factors barley pan-genome gene duplication grain size

Barley Can Utilise Algal Feriliser to Maintain Yield and Malt Quality Compared to Mineral Fertiliser

Authors: Ashworth, D. J., Masson, S., Mulholland, T., Bulgarelli, D., Houston, K.

Date: 2025-08-13 · Version: 1
DOI: 10.1101/2025.08.12.667670

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study compared the effects of Chlorella vulgaris powder versus conventional mineral fertilizer on the phenology, yield components, and malt quality of barley cv. Laureate, providing equal nitrogen inputs. Across three glasshouse experiments and a field trial, algae‑based fertilizer performed comparably to mineral fertilizer in all measured traits except total malt nitrogen, supporting its potential as a circular‑economy fertilizer. The results serve as proof‑of‑concept for larger‑scale algal fertilizer trials.

Chlorella vulgaris barley (Hordeum vulgare) algal fertilizer malt quality circular economy

Foliar Application of Polymer-coated Manganese Dioxide Nanoparticles: Mechanisms of Uptake and Metabolic Responses in Manganese Deficient Barley

Authors: Pinna, A., Gronbak, A. K., Kristensen, E. V., Thiebaut, N., Szameitat, A., Martin-Bertelsen, B., Hassenkam, T., Grivel, J.-C., Mokso, R., Husted, S.

Date: 2025-08-13 · Version: 1
DOI: 10.1101/2025.08.11.669670

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study shows that pH‑responsive polyacrylic acid‑coated MnO₂ nanoparticles can rapidly restore manganese deficiency in barley leaves through stomatal entry and controlled release of Mn ions. Advanced imaging revealed distinct uptake pathways compared with ionic Mn, limited basipetal movement of intact nanoparticles, and no phytotoxicity even at high doses, highlighting nanotechnology’s potential for efficient foliar fertilization.

nanoparticle foliar fertilization manganese deficiency Hordeum vulgare pH‑responsive MnO₂ bioimaging

New molecular players: siRNA expression and gene regulation in Hordeum vulgare ageing seeds after germination

Authors: Puchta-Jasinska, M., Bolc, P., Motor, A., Boczkowska, M.

Date: 2025-08-01 · Version: 1
DOI: 10.1101/2025.07.28.667253

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

This study provides the first comprehensive siRNA profiling of barley (Hordeum vulgare) seeds to uncover molecular signatures associated with seed viability and germination. Using sRNA sequencing of seeds stored under controlled conditions, the authors identified over 85,000 differentially expressed siRNAs, with distinct temporal patterns of trans-acting siRNAs linked to seed vigor, while demonstrating that siRNAs remain stable even in low‑viability seeds. Gene ontology and degradome analyses linked these siRNAs to key processes such as cytochrome function, root development, and carbohydrate metabolism, highlighting their role in seed longevity and germination.

small interfering RNAs seed viability RNA-directed DNA methylation Hordeum vulgare sRNA sequencing
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