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AI-summarized plant biology research papers from bioRxiv

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Phosphite, an analog of phosphate, counteracts Phosphate Induced Susceptibility of rice to the blast fungus Magnaporthe oryzae

Authors: Mallavarapu, M. D., Martin-Cardoso, H., Bücker, G., Alussi, M., Garcia-Molina, A., San Segundo, B.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.700763

Category: Plant Biology

Model Organism: Multi-species

AI Summary

Phosphite (Phi) and phosphate (Pi) share the same root uptake system, but Phi acts as a biostimulant that modulates plant growth and disease resistance in a species‑ and Pi‑dependent manner. In Arabidopsis, Phi induces hypersensitive‑like cell death and enhances resistance to Plectosphaerella cucumerina, while in rice it counteracts Pi‑induced susceptibility to Magnaporthe oryzae and Fusarium fujikuroi, accompanied by extensive transcriptional reprogramming.

phosphite (Phi) phosphate (Pi) plant immunity pathogen resistance transcriptomic reprogramming

Multi-Level Characterization Reveals Divergent Heat Response Strategies Across Wheat Genotypes of Different Ploidy

Authors: Arenas-M, A., Mino, I., Uauy, C., Calderini, D. F., Canales, J.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.701169

Category: Plant Biology

Model Organism: Multi-species

AI Summary

Field experiments combined with RNA sequencing revealed that wheat ploidy influences heat stress resilience, with tetraploid T. turgidum showing the smallest yield loss and hexaploid T. aestivum mounting the largest transcriptional response. Ploidy-dependent differences were observed in differential gene expression, alternative splicing—including hexaploid-specific exon skipping of NF‑YB—and co‑expression networks linked to grain traits, highlighting candidate pathways for breeding heat‑tolerant wheat.

heat stress wheat ploidy RNA sequencing differential gene expression alternative splicing

Flow cytometry protocols, relative genome size and ploidy levels for 1104 species of non-apomictic angiosperms from the Eastern Alps - a community resource based on the screening of 45,000 samples

Authors: Koutecky, P., Zeni, T., Magauer, M., Manukjanova, A., Span, G., Sipkova, H., Vitova, J., Urfus, T., Kolar, F., Schonswetter, P.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.21.700804

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study applied flow cytometry with DAPI staining to estimate genome size and ploidy levels in approximately 45,000 silica-dried samples spanning 1,135 non‑apomictic angiosperm species from the Eastern Alps, achieving successful ploidy assignment for 97% of the species. A largely universal protocol sufficed for 80% of the samples, while tissue type and buffer modifications were needed for the remainder, revealing that 34% of species contain polyploid cytotypes and 16% are ploidy‑variable.

flow cytometry ploidy estimation silica-dried tissue genome size Eastern Alps flora

Roots of Wheat and Rice maintain Gravitropic Setpoint Angles (GSAs)

Authors: Roychoudhry, S., Kepinski, S., Kaye, R. A. S., Stemp-Walsh, F., Kitching, Z., King, A.

Date: 2026-01-22 · Version: 1
DOI: 10.64898/2026.01.19.700323

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study demonstrates that wheat seminal roots and rice crown roots maintain gravitropic setpoint angles (GSAs) by returning to their original growth angles after displacement, and exhibit an antigravitropic offset under clinorotation. Exogenous auxin steepens rooting in both species, indicating conserved hormonal regulation, while lateral root GSA responses differ between wheat and rice.

root growth angle gravitropic setpoint angle auxin regulation cereal roots wheat and rice

Host-Botrytis co-transcriptomics reveals finely tuned interactions with closely related legumes

Authors: Muhich, A. J., Singh, R., Tom, C., Caseys, C., Srinivas, K., Faieta, L., Grabbe, B., Kliebenstein, D.

Date: 2026-01-21 · Version: 1
DOI: 10.64898/2026.01.20.700702

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study uses a co‑transcriptomic approach to examine interactions between the generalist necrotroph Botrytis cinerea and two closely related legume hosts, common bean (Phaseolus vulgaris) and cowpea (Vigna unguiculata), across 72 pathogen isolates. While lesion size is mainly driven by pathogen genetic variation, both host and pathogen transcriptomes exhibit strong host × isolate interactions, revealing extensive transcriptional plasticity and host‑specific rewiring of virulence and defense networks that lead to similar disease outcomes.

Botrytis cinerea co‑transcriptomics legume hosts transcriptional plasticity host‑pathogen interaction

Beyond Peak Wavelength: Spectral Bandwidth of Blue and Red-Blue Laser Diodes (LDs) Reprograms Photosynthesis, Canopy Architecture, Senescence, and Whole-Plant Growth

Authors: Li, L., Sugita, R., Togawa, H., Terashima, I., Yamori, W.

Date: 2026-01-20 · Version: 1
DOI: 10.64898/2026.01.18.700227

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study compared narrow-band laser diode (LD) lighting with broad-band LED lighting under monochromatic blue and combined red‑blue spectra in tobacco, lettuce, and Arabidopsis, finding that LDs reduced photosynthetic rates but improved canopy architecture and delayed lower‑leaf senescence. When red and blue were combined, LD lighting mitigated continuous‑light stress and enhanced growth, chlorophyll content, and overall plant health, highlighting spectral bandwidth as a key lever for indoor horticulture.

spectral bandwidth canopy architecture leaf senescence laser diode lighting indoor horticulture

Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae

Authors: Choudhary, N., Hagedorn, M., Pucker, B.

Date: 2026-01-18 · Version: 2
DOI: 10.1101/2025.10.06.680802

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study examined anthocyanin pigmentation across 183 Cucurbitaceae species and found a systematic loss of key biosynthetic and regulatory genes, indicating that anthocyanin absence is widespread in this family. Phylogenomic and synteny analyses support a stepwise loss of anthocyanin pathways, likely compensated partially by carotenoid‐based coloration.

anthocyanin loss Cucurbitaceae phylogenomics synteny analysis carotenoid pigmentation

Insight into GABA shunt-associated aldehyde dehydrogenases (ALDH) and stress responses of ALDH superfamily in moss and barley

Authors: Kopecny, D. J., Belicek, J., Kopecna, M., Vigouroux, A., Koncitikova, R., von Schwartzenberg, K., Koncakova, K., Zeljkovic, S. C., Valarik, M., Muller, K., Kouril, R., Bergougnoux-Fojtik, V. H., Morera, S., Kopecny, D.

Date: 2026-01-14 · Version: 1
DOI: 10.64898/2026.01.13.699213

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study compared expression of aldehyde dehydrogenase (ALDH) families in the moss Physcomitrium patens and barley Hordeum vulgare under stress, highlighting distinct patterns especially in the GABA‑shunt‑related ALDH5, ALDH10 and ALDH21 families. Functional analyses—including kinetic assays, crystal structure determination of PpALDH5F1, and knockout mutants—revealed that loss of specific ALDH genes in moss impairs growth, alters GABA, glutamate and glutamine levels, and triggers up‑regulation of glutathione‑S‑transferase genes as a compensatory oxidative‑stress response.

Aldehyde dehydrogenase GABA shunt Physcomitrium patens Hordeum vulgare Knockout mutants

Sweet signals: Using floral traits to predict nectar sugar availability

Authors: Herreros Moya, E., Sinka, M., Portwood, H., Mackay, G., Storer, K., Kuhn, N., Willis, K.

Date: 2026-01-14 · Version: 1
DOI: 10.64898/2026.01.14.699445

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study examined how corolla morphology predicts nectar volume and sugar concentration across 156 flowering plant species from the UK and Zambia, distinguishing tubular from non‑tubular flowers. Linear and mixed‑effects models revealed that tube length and width drive higher nectar rewards in tubular flowers, while corolla width and shape are key predictors in non‑tubular forms, with weak phylogenetic constraints on nectar volume. These findings provide simple morphological proxies for estimating nectar resources relevant to mosquito and pollinator ecology.

nectar volume corolla morphology tubular flowers phylogenetic signal mosquito feeding

Gn1a rice promotes symbiotic fish growth via reprogramming soil microbiome

Authors: Zeng, S., Zhang, Y., He, R., Pang, H., Huang, Z., Deng, Z., Tang, X., Zhou, R., Li, T., Lv, J., Huang, Q., Yang, J., Weng, S., He, J., Chen, M. Y. Q.

Date: 2026-01-14 · Version: 1
DOI: 10.64898/2026.01.13.699285

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study co‑cultured cytokinin‑overproducing ckx2 mutant rice (Oryza sativa) with common carp (Cyprinus carpio) and found that the mutant rice enhanced fish growth by ~10% and improved antibacterial resistance, effects that depended on alterations of the soil microbial community. Rice‑derived cytokinins reshaped soil microbiota, which were subsequently transferred to the fish gut, modulating keystone microbes to increase short‑chain fatty acid production and carbohydrate degradation, thereby promoting cross‑kingdom growth.

cytokinin rice‑fish symbiosis soil microbiota gut microbiome cross‑kingdom interaction
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