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Latest 25 Papers

Efficient accumulation of new irregular monoterpene malonyl glucosides in Nicotiana benthamiana achieved by co-expression of isoprenyl diphosphate synthases and substrate-producing enzymes

Authors: Gerasymenko, I., Sheludko, Y. V., Schmidts, V., Warzecha, H.

Date: 2025-08-07 · Version: 1
DOI: 10.1101/2025.08.06.668877

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study established a transient expression system in Nicotiana benthamiana to boost DMAPP production and enable biosynthesis of glycosylated irregular monoterpenes using three IDS enzymes. Co‑expression of pathway bottleneck enzymes significantly increased yields of chrysanthemyl, lavandulyl, and cyclolavandulyl glucosides, achieving the highest reported concentrations of irregular monoterpene glycosides in a plant system.

irregular monoterpenes glycosylation DMAPP biosynthesis transient expression Nicotiana benthamiana

Protocol for capturing the RNA-binding proteome from plants using orthogonal organic phase separation

Authors: Sanchez-Camargo, V. A., Kramer, G., van den Burg, H. A.

Date: 2025-07-29 · Version: 1
DOI: 10.1101/2025.07.29.667348

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The authors present a protocol to isolate RNA-binding proteins (RBPs) cross-linked to RNA in bulk, detailing in vivo UV crosslinking, tissue lysis, fractionation, and organic solvent purification of RNA‑protein adducts for proteomic analysis. While optimized for Nicotiana benthamiana leaves, the method is adaptable to other plant species and tissues.

RNA-binding proteins UV crosslinking proteomics RNA‑protein adduct purification Nicotiana benthamiana

An effector from the potato late blight pathogen bridges ENTH-domain protein TOL9a to an activated helper NLR to suppress immunity

Authors: Madhuprakash, J., Toghani, A., Pai, H., Harvey, M., Bentham, A. R., Seager, B. A., Yuen, E. L. H., De la Concepcion, J. C., Lawson, D. M., Stevenson, C. E. M., Vergara-Cruces, A., Derevnina, L., Bozkurt, T. O., Banfield, M. J., Kamoun, S., Contreras, M. P.

Date: 2025-07-08 · Version: 1
DOI: 10.1101/2025.07.06.663370

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study reveals that the Phytophthora infestans RXLR-LWY effector AVRcap1b binds the host ESCRT component NbTOL9a via a novel L-shaped fold, forming a complex that is essential for suppressing immunity through a helper NLR, NbNRC2. Structural analysis and mutagenesis show that disruption of the NbTOL9a‑AVRcap1b interface impairs virulence, indicating the effector acts as a bridge linking NbTOL9a to activated NbNRC2.

Phytophthora infestans AVRcap1b NbTOL9a helper NLR crystal structure

Virus-induced upregulation of mitochondrial metabolism modulates cytosolic redox balance and defense responses

Authors: Hou, L.-Y., Wu, C.-H., Lin, N.-S.

Date: 2025-07-06 · Version: 1
DOI: 10.1101/2025.07.05.663277

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

Using integrated metabolomics, fluxomics, and proteomics, the study shows that Bamboo mosaic virus infection in Nicotiana benthamiana redirects carbon flux toward glycolysis and the Krebs cycle, increasing mitochondrial enzyme abundance. Silencing the mitochondrial NAD⁺-dependent malic enzyme 1 elevates viral accumulation and disrupts cytoplasmic NADH/NAD⁺ balance, highlighting mitochondrial metabolism’s role in modulating redox status and antiviral defense.

Bamboo mosaic virus mitochondrial metabolism redox balance glycolysis and Krebs cycle Nicotiana benthamiana

Mutualist-pathogen co-colonisation modulates phosphoinositide signatures at host intracellular interfaces

Authors: Guyon, A., Staps, T., Badot, L., Schornack, S.

Date: 2025-06-24 · Version: 1
DOI: 10.1101/2025.06.23.661106

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

Using Nicotiana benthamiana plants expressing PI4P and PI(4,5)P2 biosensors, the study visualized root colonisation by the pathogen Phytophthora palmivora and the mutualist fungus Funneliformis mosseae. Distinct phosphoinositide patterns were observed—PI(4,5)P2 enriched at mutualist interfaces and PI4P absent from pathogen membranes—but co‑colonisation triggered recruitment of PI4P to pathogen haustoria and increased resistance. These results show that phosphoinositide signatures differentiate pathogenic and mutualistic interfaces and can be dynamically remodelled during simultaneous colonisation.

phosphoinositide signaling PI4P PI(4,5)P2 Nicotiana benthamiana co-colonisation

The recognition of YopJ family effectors depends on ZAR1/JIM2 immune complex in Nicotiana benthamiana.

Authors: Kim, I., Kim, J., Ahn, Y. J., Sohn, K. H., Segonzac, C.

Date: 2025-06-08 · Version: 1
DOI: 10.1101/2025.06.04.657961

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study screened 20 YopJ family effectors from diverse phytopathogenic bacteria in Nicotiana benthamiana and found that 12 are recognized by the NLRs NbZAR1 and/or NbPtr1, triggering hypersensitive cell death. The effector‑induced HR can be differentially suppressed by the deacetylase SUPPRESSOR OF AVRBST‑ELICITED RESISTANCE 1, indicating multiple recognition mechanisms. These findings establish the genetic basis for YopJ effector detection in N. benthamiana and set the stage for mechanistic analyses of NbZAR1/JIM2 and NbPtr1 activation.

YopJ family effectors NLR receptors NbZAR1 NbPtr1 hypersensitive response

Comparative genomics-driven design of virus-delivered short RNA inserts triggering robust gene silencing

Authors: Garcia, A., Aragones, V., Gioiosa, S., Herraiz, F. J., Ortiz-Garcia, P., Prohens, J., Daros, J.-A., Pasin, F.

Date: 2025-06-06 · Version: 1
DOI: 10.1101/2025.06.03.657697

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study engineered virus-delivered short RNA inserts (vsRNAi) of 24‑32 nt to simultaneously silence homeologous gene pairs in Nicotiana benthamiana, achieving quantitative phenotypes and transcriptome-wide changes linked to 21‑ and 22‑nt sRNA production. The approach was also validated in tomato and scarlet eggplant, demonstrating its utility for functional genomics and trait reprogramming in both the model species and crops.

virus-induced gene silencing vsRNAi short RNA inserts functional genomics Nicotiana benthamiana

The highly conserved aphid effector pair Mp1-Mp58 associates to form an effector complex that targets host trafficking protein VPS52

Authors: Bleau, J. R., Gaur, N., Waksman, T., Fisher, S. R., Porter, M., Bos, J. I.

Date: 2025-05-13 · Version: 1
DOI: 10.1101/2025.05.12.653458

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study demonstrates that the aphid effectors Mp1 and Mp58 from Myzus persicae interact both in planta and in vitro, forming an oligomeric complex that also associates with the plant host protein VPS52 and localizes to vesicle-like structures in Nicotiana benthamiana. Using ectopic expression, co‑immunoprecipitation, confocal microscopy, recombinant protein assays, and computational modeling, the authors reveal a novel effector‑effector‑target complex, highlighting added complexity in plant‑insect molecular interactions.

effector complex Myzus persicae Nicotiana benthamiana VPS52 co-immunoprecipitation

Defender or accomplice? Dual roles of plant vesicle trafficking in restricting and enabling geminiviral systemic infection.

Authors: Cana-Quijada, P., Morales-Martinez, P., Rosas-Diaz, T., Jimenez-Gongora, T., Navarro, J. A., Lozano-Duran, R., Castillo, A. G., Pallas, V., Bejarano, E.

Date: 2025-04-28 · Version: 1
DOI: 10.1101/2025.04.25.650579

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study demonstrates that vesicle trafficking components have opposing impacts on geminivirus infection in Nicotiana benthamiana: silencing NbSAR1 or NbAP-1γ enhances systemic viral DNA accumulation, whereas silencing Nbδ‑COP, NbARF1, or clathrin genes nearly abolishes infection without affecting replication. These results indicate that endocytosis and retrograde transport are essential for viral movement, while vacuolar and autophagy pathways may contribute to antiviral defense, and the effects are specific to geminiviruses.

vesicle trafficking geminivirus Nicotiana benthamiana gene silencing viral movement

Polyphenol oxidase silencing avoids protein crosslinking and enzymatic browning in Nicotiana benthamiana leaf extracts

Authors: Mahadevan, C., Watts, E. C., Zheng, K., Song, S.-j., van der Hoorn, R. A. L.

Date: 2025-04-01 · Version: 1
DOI: 10.1101/2025.03.31.646341

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

Silencing polyphenol oxidase (PPO) in Nicotiana benthamiana prevents oxidative browning and protein cross‑linking in agroinfiltrated leaf extracts without affecting plant growth, and it may also boost transient gene expression. These findings suggest that reducing PPO activity can improve plant science techniques and molecular pharming.

polyphenol oxidase enzymatic browning protein precipitation transient gene expression
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