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AI-summarized plant biology research papers from bioRxiv

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Multi-Level Characterization Reveals Divergent Heat Response Strategies Across Wheat Genotypes of Different Ploidy

Authors: Arenas-M, A., Mino, I., Uauy, C., Calderini, D. F., Canales, J.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.701169

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study compared heat stress responses in diploid (T. monococcum), tetraploid (T. turgidum), and hexaploid (T. aestivum) wheat, finding that the tetraploid retained the highest grain yield under severe heat while the hexaploid showed the most extensive transcriptional changes. Transcriptome and splicing analyses revealed ploidy‑dependent regulatory reprogramming, including a heat‑induced exon‑skipping event in a NF‑YB transcription factor unique to hexaploid wheat, highlighting distinct strategies for heat tolerance across wheat ploidy levels.

heat stress wheat ploidy transcriptome profiling alternative splicing grain yield

Design and deployment of a regulation-compliant infrared heating system for UK field trials.

Authors: Faci, I., Rogerson, P., Simmonds, J., Hewitt, M., Playford, D., Dodd, A. N., Uauy, C.

Date: 2026-01-22 · Version: 1
DOI: 10.64898/2026.01.19.700297

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The authors present a hexagonal T‑FACE warming system that meets UK/EU health‑safety standards and uses real‑time temperature‑responsive control to maintain a set temperature difference between heated and ambient plots. Field tests on a winter wheat crop demonstrated that the system reliably altered phenology and morphology (heading date, plant height, spike length, spikelet number), highlighting its utility for climate‑change research under realistic conditions.

T‑FACE warming system field climate warming wheat phenology temperature‑responsive control regulation‑compliant design

Root phenolics as potential drivers of preformed defenses and reduced disease susceptibility in a paradigm bread wheat mixture

Authors: Mathieu, L., Chloup, A., Marty, S., Savajols, J., Paysant-Le Roux, C., Launay-Avon, A., Martin, M.-L., Totozafy, J.-C., Perreau, F., Rochepeau, A., Rouveyrol, C., Petriacq, P., Morel, J.-B., Meteignier, L.-V., Ballini, E.

Date: 2026-01-14 · Version: 1
DOI: 10.64898/2026.01.13.699261

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

Using a bread wheat (Triticum aestivum) varietal mixture, the authors showed that root‑derived chemical interactions lower leaf susceptibility to Septoria tritici blotch by triggering phenolic‑mediated signaling and extensive transcriptional and metabolic reprogramming. Disrupting these root interactions abolished both the disease‑reduction effect and the associated molecular responses, linking root signals to enhanced leaf defense.

Triticum aestivum Septoria tritici blotch root-mediated interactions phenolic compounds transcriptomics

Wheat diversity reveals new genomic loci and candidate genes for vegetation indices using genome-wide association analysis

Authors: Rustamova, S., Jahangirov, A., Leon, J., Naz, A. A., Huseynova, I.

Date: 2026-01-14 · Version: 1
DOI: 10.64898/2026.01.14.699455

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

A genome-wide association study of 187 bread wheat (Triticum aestivum) genotypes identified 812 significant SNPs linked to 25 spectral vegetation indices under rain‑fed drought conditions, revealing high heritability (H² = 0.19‑0.95). A major QTL hotspot on chromosome 2A, tagged by wsnp_Ex_c36049_44083089, was associated with 17 indices and explained up to 20% of phenotypic variance, co‑localizing with candidate LEA/NDR1‑like and lectin receptor‑like kinase genes involved in stress signaling. These findings demonstrate that vegetation indices are heritable digital traits useful for selecting drought‑resilient wheat.

drought stress vegetation indices genome-wide association study QTL hotspot 2A Triticum aestivum

Physics-Informed Neural Network Methods for Predicting Plant Height Development

Authors: Shao, Y., van Eeuwijk, F., Peeters, C., Zumsteg, O., Athanasiadis, I., van Voorn, G.

Date: 2026-01-14 · Version: 1
DOI: 10.64898/2026.01.14.699475

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study presents a hybrid framework that integrates a logistic ordinary differential equation with an LSTM network to form a physics‑informed neural network (PINN) for modeling wheat plant height dynamics. Using only time and temperature as inputs, the PINN outperformed traditional ODE and machine‑learning models, achieving the lowest average RMSE and reduced variability across random initialisations. The results highlight that embedding biological growth constraints into data‑driven models can substantially improve longitudinal trait predictions, especially with limited training data.

Physics‑Informed Neural Network LSTM logistic ODE wheat growth prediction temporal modeling

The juvenile-to-adult phase transition in wheat is independent of the winter-spring growth habit regulated by VRN1

Authors: Senoo, K., Yoshikawa, T., Gorafi, Y. S. A., Nasuda, S.

Date: 2026-01-13 · Version: 1
DOI: 10.64898/2026.01.13.699194

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study examined the timing of the juvenile‑to‑adult (JA) phase transition in winter and spring wheat varieties and found it varies among genotypes but is independent of the vernalization gene VRN1. Analyses of shoot apex morphology, leaf traits, and expression of miR156 and miR172 showed later JA transitions are linked to greater phenotypic plasticity, offering insights for breeding.

juvenile-to-adult phase transition miR156/miR172 VRN1 phenotypic plasticity Triticum aestivum

AGIcam: An open-source IoT-based camera system for automated in-field phenotyping and yield prediction

Authors: Sangjan, W., Pukrongta, N., Buchanan, T., Carter, A. H., Pumphrey, M. O., Sankaran, S.

Date: 2026-01-13 · Version: 1
DOI: 10.64898/2026.01.13.699185

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study presents AGIcam, an open-source IoT camera system that continuously captures RGB and NoIR images for in-field phenotyping of wheat, achieving >85% uptime across 18 deployments. Time-series vegetation indices derived from the imagery were used in random forest and LSTM models to predict yield, with the LSTM attaining mean errors of 3.41% for spring wheat and 1.62% for winter wheat. The results demonstrate that IoT‑based platforms can provide high‑resolution, real‑time data for scalable crop phenotyping and yield prediction.

IoT phenotyping continuous imaging wheat yield prediction LSTM AGIcam

Single-cell transcriptomic landscapes reveal cell-type-specific regulatory mechanisms of nutrient accumulation and transport in wheat grain

Authors: Zhang, Z., Li, X., Lin, X., Zhu, F., Zhang, Q., Xiao, J., Chen, Y.

Date: 2026-01-08 · Version: 1
DOI: 10.64898/2026.01.07.698077

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study generated single-nucleus RNA‑seq atlases of wheat grains at 4 and 8 days after pollination, identifying 16 cell populations across seed tissues and revealing a transcriptional shift from growth‑related pathways to nutrient accumulation. Functional analyses showed that the transcription factors TaMADS58 and TaJEKLL regulate pericarp cell number, protein content, and nucellar projection development, providing targets to decouple yield from quality traits.

single-nucleus RNA sequencing wheat (Triticum aestivum) TaMADS58 TaJEKLL grain development

Regulation of spikelet number during wheat spike development

Authors: Li, C., Li, K., Zhang, C., Dubcovsky, J.

Date: 2026-01-08 · Version: 1
DOI: 10.64898/2026.01.07.698073

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The review discusses how wheat spikelet number per spike (SNS) is determined by the production rate of spikelet meristems and the timing of the inflorescence meristem's transition to a terminal spikelet, both regulated by meristem identity genes and florigen transport. It also examines genetic strategies—such as supernumerary spikelet formation and allele combinations—that can increase SNS without compromising fertility, highlighting recent spatial transcriptomics and multi‑omics advances that facilitate discovery of new SNS regulators.

spikelet number per spike inflorescence meristem florigen supernumerary spikelets spatial transcriptomics

Night temperature determines nearly half of wheat yield variation globally

Authors: Schulthess, U., Reynolds, M. P., Atkin, O., Giron, E., Asseng, S., Snapp, S.

Date: 2026-01-02 · Version: 1
DOI: 10.64898/2025.12.19.695361

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study used 42 years of spring wheat yield data from 255 sites to assess how rising daily minimum temperatures affect grain filling and overall yield. It found that each 1 °C increase in minimum temperature during grain filling reduces yield by about 0.5 t ha⁻¹, accounting for up to 10% loss across test sites, likely due to shortened grain filling periods and increased nocturnal respiration. Improving wheat adaptation to warmer nights could substantially boost global wheat production.

minimum temperature grain filling wheat yield nighttime respiration climate change
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