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AI-summarized plant biology research papers from bioRxiv

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Latest 10 Papers

Radiation-Driven Prediction of Daily Irrigation Demand under Different Electrical Conductivity Scenarios in Greenhouse Tomato

Authors: Xiao, L.

Date: 2026-01-24 · Version: 1
DOI: 10.64898/2026.01.23.701235

Category: Plant Biology

AI Summary

This study developed a low-input model to predict daily irrigation demand for greenhouse tomatoes based on solar radiation, evaluating if adding irrigation-solution electrical conductivity (EC) improves accuracy. Results showed that a radiation-only model was highly effective, with EC providing only a small and scenario-dependent improvement. The proposed framework offers a practical tool for irrigation forecasting in soilless tomato cultivation, supporting integrated water-salt management.

Tomato Solar Radiation Electrical Conductivity (EC) Water-Salt Management Irrigation Forecasting

Phenotypic differentiation between highland and coastal quinoa under cold stress conditions

Authors: Rakasi, N., Kienbaum, L., Boendel, K., Wiederstein, J. D., Ganga Raju, N. K., Schmoeckel, S. M., Schmid, K. J.

Date: 2026-01-24 · Version: 1
DOI: 10.64898/2026.01.23.701318

Category: Plant Biology

AI Summary

This study evaluated the adaptation of 60 quinoa accessions to cold stress by assessing their germination and phenotypic variation across different sowing dates in South-Western Germany. Highland accessions demonstrated superior germination performance under cold stress, while early sowing led to the highest seed yields despite lower emergence rates. The research suggests that combining the cold tolerance of highland types with the higher yielding and faster maturing characteristics of coastal ecotypes could be a promising strategy for breeding improved quinoa varieties for colder climates.

Quinoa Cold Stress Germination Genetic Diversity Breeding

Molecular basis of delayed leaf senescence induced by short-term treatment with low phosphate in rice

Authors: Martin-Cardoso, H., Bundo, M., Garcia-Molina, A., San Segundo, B.

Date: 2026-01-24 · Version: 1
DOI: 10.64898/2026.01.23.701354

Category: Plant Biology

AI Summary

This study investigates the influence of phosphate levels on leaf senescence in rice, revealing that low phosphate supply delays this process and enhances tolerance to oxidative stress, while high phosphate accelerates it. The research identifies MIR827 as a key regulator, as editing this gene reduces phosphorus content and delays senescence. Transcriptomic analysis further uncovers the biological processes involved, offering potential strategies for sustainable rice production.

Leaf senescence Phosphate Rice MIR827 Oxidative stress

KAMALA, a genome edited rice variety with improved yield by finetuning cytokinin oxidase activity released in India

Authors: Solanki, M., Yousuf, F., Sundaram, R. M., Katta, S., Srividya, G. K., Ramireddy, E., Chatterjee, S., Ranjan, A., Singh, B., Brajendra, P., Neeraja, C. N., Sai Prasad, S. V., Jukanti, A. K., Sakhare, A. S., Chinnusamy, V., Yang, B., Frommer, W. B., Mangrauthia, S. K. K.

Date: 2026-01-24 · Version: 1
DOI: 10.64898/2026.01.23.701329

Category: Plant Biology

AI Summary

Researchers used CRISPR/Cas12a to introduce subtle mutations into the rice cytokinin oxidase gene CKX2 in the Samba Mahsuri variety to improve crop yield. The resulting line, KAMALA, exhibited a 19% increase in grain yield along with other beneficial agronomic traits. This genome-edited variety was registered as the first ready for cultivation by Indian farmers following successful field trials.

CKX2 CRISPR/Cas12a Yield Rice Genome Editing

A structured RNA balances DEAD-box RNA helicase function in plant alternative splicing control

Authors: Burgardt, R., Bauer, J., Reinhardt, M., Rupp, N., Engel, C., Hellmann, S. L., Sack, M., Weinberg, Z., Wachter, A.

Date: 2026-01-24 · Version: 1
DOI: 10.64898/2026.01.23.701338

Category: Plant Biology

AI Summary

A study on the conserved DEAD RNA structural element in land plant DEAD-box RNA helicase (DRH) genes reveals it functions as a sensor for RNA helicase activity by controlling alternative splicing in a negative feedback loop. In Arabidopsis thaliana, this DEAD element in DRH1 and its paralog regulates splice site usage to balance transcript and protein levels, preventing severe stress phenotypes caused by unregulated expression.

DEAD element alternative splicing negative feedback loop RNA helicase Arabidopsis thaliana

Circadian entrainment to environmental cues in a natural plant population

Authors: Paajanen, P., Muranaka, T., de Barros Dantas, L. L., Panter, P. E., Yumoto, G., Honjo, M. N., Kudoh, H., Dodd, A.

Date: 2026-01-24 · Version: 1
DOI: 10.64898/2026.01.23.701304

Category: Plant Biology

AI Summary

This study investigated how environmental cues, such as temperature and light, adjust the circadian clock under natural conditions. Researchers found that temperature changes circadian timing and that there are unbalanced effects between light and temperature on entrainment, with extensive circadian modulation of temperature responses. Ultimately, the plasticity of circadian timing allows for flexible responses of the clock and its outputs to environmental stimuli.

circadian clock natural conditions temperature cues entrainment environmental plasticity

Optimizing light environment enables speed breeding in forage legumes: physiological limits and generation time reduction in Medicago sativa and Medicago truncatula

Authors: Berais-Rubio, A., Couture, C., Rodriguez-Briosso, M., Signorelli, S.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.20.700577

Category: Plant Biology

AI Summary

This study optimized speed breeding protocols for the forage legumes Medicago sativa (alfalfa) and Medicago truncatula by adjusting light intensity, photoperiod, and light quality. The researchers found that specific light conditions significantly accelerated reproductive development and reduced the time to seed harvest without compromising seed viability. This optimization establishes a practical platform for accelerating the breeding cycles of these important forage crops.

Speed Breeding Medicago sativa Forage Legumes Light Quality Medicago truncatula

Arabidopsis GLK transcription factors interact with ABI4 to modulate cotyledon greening in light-exposed etiolated seedlings

Authors: Yu, P., Saga, F., Baeumers, M., Hoecker, U.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.701071

Category: Plant Biology

AI Summary

This study identifies ABI4 as a key upstream inhibitor of the transcription factors GLK1 and GLK2 to prevent the excessive accumulation of protochlorophyllide (Pchlide) in etiolated seedlings. By regulating Pchlide levels, the ABI4-GLK module prevents the generation of damaging reactive oxygen species (singlet oxygen) and subsequent seedling death upon exposure to light. These findings demonstrate a mechanism ensuring etioplast development is tightly controlled to facilitate safe greening during the dark-to-light transition.

GLK1/GLK2 ABI4 protochlorophyllide (Pchlide) singlet oxygen etiolation

Decoding stage-specific symbiotic programs in the Rhizophagus irregularis-tomato interaction using single-nucleus transcriptomics

Authors: Stuer, N., Leroy, T., Eekhout, T., De Keyser, A., Staut, J., De Rybel, B., Vandepoele, K., Van Damme, P., Van Dingenen, J., Goormachtig, S.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.701092

Category: Plant Biology

AI Summary

Researchers generated a single-nucleus RNA-sequencing (snRNA-seq) dataset of Solanum lycopersicum (tomato) roots colonized by the arbuscular mycorrhizal fungus Rhizophagus irregularis. This high-resolution analysis resolved distinct cell populations and a developmental gradient within cortical cells, revealing stage-specific transcriptional signatures and candidate transcription factors that orchestrate the symbiosis. The study provides a valuable resource for identifying genes that coordinate processes like cell cycle reactivation and nutrient integration to facilitate fungal accommodation.

Arbuscular mycorrhizal fungi (AMF) single-nucleus RNA-sequencing (snRNA-seq) Solanum lycopersicum symbiosis transcriptional signatures

Phosphite, an analog of phosphate, counteracts Phosphate Induced Susceptibility of rice to the blast fungus Magnaporthe oryzae

Authors: Mallavarapu, M. D., Martin-Cardoso, H., Bücker, G., Alussi, M., Garcia-Molina, A., San Segundo, B.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.700763

Category: Plant Biology

AI Summary

Researchers investigated the effects of phosphate (Pi) and its non-metabolizable analog, phosphite (Phi), on Arabidopsis thaliana and rice. They found that Phi can trigger immune responses in Arabidopsis and reverse Pi-induced disease susceptibility in rice by reprogramming gene expression related to signaling and metabolism.

Phosphite Phosphate Disease resistance Rice Transcriptomics
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