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AI-summarized plant biology research papers from bioRxiv

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A drought stress-induced MYB transcription factor regulates pavement cell shape in leaves of European aspen (Populus tremula)

Authors: Liu, S., Doyle, S. M., Robinson, K. M., Rahneshan, Z., Street, N. R., Robert, S.

Date: 2026-01-16 · Version: 1
DOI: 10.64898/2026.01.16.699252

Category: Plant Biology

Model Organism: Populus tremula

AI Summary

The study examined leaf pavement cell shape complexity across a natural European aspen (Populus tremula) population, using GWAS to pinpoint the transcription factor MYB305a as a regulator of cell geometry. Functional validation showed that MYB305a expression is induced by drought and contributes to shape simplification, with cell complexity negatively correlated with water-use efficiency and climatic variables of the genotypes' origin.

leaf pavement cells Populus tremula MYB305a GWAS drought stress

Wheat diversity reveals new genomic loci and candidate genes for vegetation indices using genome-wide association analysis

Authors: Rustamova, S., Jahangirov, A., Leon, J., Naz, A. A., Huseynova, I.

Date: 2026-01-14 · Version: 1
DOI: 10.64898/2026.01.14.699455

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

A genome‑wide association study of 187 bread wheat genotypes identified 812 significant loci linked to 25 spectral vegetation indices under rainfed drought conditions, revealing a major QTL hotspot on chromosome 2A that accounts for up to 20% of variance in greenness and pigment traits. Candidate gene analysis at this hotspot uncovered stress‑responsive genes, demonstrating that vegetation indices are heritable digital phenotypes useful for selection and genetic analysis of drought resilience.

Triticum aestivum drought stress spectral vegetation indices GWAS QTL hotspot

Investigating the apical notch, apical dominance and meristem regeneration in Marchantia polymorpha.

Authors: Marron, A. O.

Date: 2026-01-10 · Version: 5
DOI: 10.1101/2024.02.04.575544

Category: Plant Biology

Model Organism: Marchantia polymorpha

AI Summary

Using laser ablation microscopy, the study dissected the role of the first cell row and a contiguous stem cell quorum in the apical notches of germinating Marchantia gemmae, revealing that these cells are essential for meristem activity and that apical notches communicate via auxin‑mediated signals to regulate dominance and regeneration. The findings support a model of intra‑, inter‑, and extra‑notch communication governing meristem formation and maintenance in Marchantia.

meristem maintenance apical dominance laser ablation microscopy auxin signaling Marchantia gemma

The interplay between autophagy and the carbon/nitrogen ratio as key modulator of the auxin-dependent chloronema-caulonema developmental transition in Physcomitrium patens.

Authors: Pettinari, G., Liberatore, F., Mary, V., Theumer, M., Lascano, R., Saavedra, L. L.

Date: 2025-12-29 · Version: 1
DOI: 10.64898/2025.12.28.696759

Category: Plant Biology

Model Organism: Physcomitrium patens

AI Summary

Using the bryophyte Physcomitrium patens, the study shows that loss of autophagy enhances auxin‑driven caulonemata differentiation and colony expansion under low nitrogen or imbalanced carbon/nitrogen conditions, accompanied by higher internal IAA, reduced PpPINA expression, and up‑regulated RSL transcription factors. Autophagy appears to suppress auxin‑induced differentiation during nutrient stress, acting as a hub that balances metabolic cues with hormonal signaling.

autophagy auxin signaling carbon/nitrogen ratio Physcomitrium patens caulonemata development

Do stomatal movements have a limited dynamic range?

Authors: Muraya, F., Siqueira, J. A., Very, A.-A., Roelfsema, R.

Date: 2025-12-26 · Version: 1
DOI: 10.64898/2025.12.22.695892

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study examined the roles of AtKUP2, AtKUP6, AtKUP8, and GORK potassium transport proteins in guard cell function by performing gas-exchange measurements on mature Arabidopsis leaves. Loss of KUP2/6/8 reduced stomatal conductance, whereas a GORK loss‑of‑function mutant showed increased conductance, yet the magnitude of light‑ and ABA‑induced transpiration changes remained similar across genotypes, suggesting a limited dynamic range for rapid stomatal movements that relies on small ionic osmolytes.

stomatal conductance potassium transporters GORK channel AtKUP2/6/8 Arabidopsis

Exogenous auxins for proline regulation in heat-stressed plants

Authors: Kaleh, A. M., Whalen, J. K.

Date: 2025-12-22 · Version: 1
DOI: 10.64898/2025.12.20.695708

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The abstract proposes that microbial indole-3-acetic acid (IAA) enhances plant thermotolerance by regulating proline metabolism, coordinating early osmoprotective synthesis with later catabolism to support growth and redox balance during heat stress. This regulation is hypothesized to involve integration of auxin perception (HSP90‑TIR1), MAPK signaling (MPK‑IAA8), mitochondrial redox components (SSR1, HSCA2) and interactions with abscisic acid and ethylene, offering a framework for using auxin‑producing microbes to boost heat resilience.

microbial indole-3-acetic acid thermomorphogenesis proline metabolism auxin signaling heat stress resilience

GWAs reveals SUBER GENE1-mediated suberization via Type One Phosphatases

Authors: Han, J.-P., Lefebvre-Legendre, L., Yu, J., Capitao, M. B., Beaulieu, C., Gully, K., Shukla, V., Wu, Y., Boland, A., Nawrath, C., Barberon, M.

Date: 2025-12-12 · Version: 2
DOI: 10.1101/2025.05.06.652434

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

Using a forward genetic screen of 284 Arabidopsis thaliana accessions, the study identified extensive natural variation in root endodermal suberin and pinpointed the previously unknown gene SUBER GENE1 (SBG1) as a key regulator. GWAS and protein interaction analyses revealed that SBG1 controls suberin deposition by binding type‑one protein phosphatases (TOPPs), with disruption of this interaction or TOPP loss‑of‑function altering suberin levels, linking the pathway to ABA signaling.

suberin deposition Arabidopsis thaliana GWAS SBG1 TOPP phosphatases

Root growth promotion by Penicillium melinii: mechanistic insights and agricultural applications

Authors: Gutierrez-Manso, L., Devesa-Aranguren, I., Conesa, C. M., Monteoliva-Garcia, G., Gonzalez-Sayer, S., Lozano-Enguita, A., Blasio, F., Ugena, L., Nolasco, J., Vazquez-Mora, A., Levy, C. C. B., Ariel Otero, E., Fernandez-Calvo, P., Moreno-Risueno, M. A., petrik, I., Pencik, A., Reguera, M., Gonzalez-Bodi, S., Huerta-Cepas, J., Sacristan, S., del Pozo, J. C., Cabrera, J.

Date: 2025-12-09 · Version: 1
DOI: 10.64898/2025.12.05.692050

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study characterizes the endophytic fungus Penicillium melinii, isolated from Arabidopsis thaliana roots, as a plant‑growth‑promoting agent that enhances root architecture and biomass across Arabidopsis, quinoa, and tomato. Integrated phenotypic, transcriptomic, and hormonal analyses reveal that the fungus stimulates auxin‑related pathways and modest stress responses, leading to increased tomato yield in field trials, underscoring its value as a model for root development and a sustainable biostimulant.

Penicillium melinii plant growth‑promoting fungus root architecture auxin signaling biostimulant

Salt stress disrupts local auxin and COP1 gradients in Arabidopsis apical hooks

Authors: van Veen, E., Kupers, J. J., Chen, X., Tang, Y. H., De Zeeuw, T., Duijts, K., Hayes, S., Testerink, C., Gommers, C. M. M.

Date: 2025-12-05 · Version: 1
DOI: 10.64898/2025.12.03.691840

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that salinity stress induces a photomorphogenic‑like response in dark‑grown Arabidopsis thaliana seedlings, resulting in reduced apical hook curvature and impaired soil emergence. This phenotype is linked to disrupted asymmetric epidermal cell elongation, decreased auxin signaling and PIN3 abundance on the hook’s concave side, repression of BBX28 expression, and loss of a spatial COP1 gradient, highlighting spatial regulation as a key factor in stress‑affected seedling development.

apical hook salinity stress COP1 spatial gradient auxin signaling BBX28 repression

KDM7-mediated oxygen sensing reprograms chromatin to enhance hypoxia tolerance in the root

Authors: Zhang, D., Chirinos, X., Del Chiaro, A., Shukla, V., Ryder, A., Beltran, A. D. P., Iacopino, S., Bota, P., Zivkovic, D., Fioriti, F., Telara, Y., Ellison, C. J., Costa, F., Elliott, P. R., Giorgi, F., Giuntoli, B., Flashman, E. G., Abreu, I., Licausi, F.

Date: 2025-11-26 · Version: 1
DOI: 10.1101/2025.11.24.690241

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study shows that Arabidopsis root tips adapt to hypoxia by increasing H3K4me3 levels, linked to the inhibition of group 7 demethylases (KDM7s). Genetic loss of KDM7s mimics hypoxic conditions, activating genes that sustain meristem survival, suggesting KDM7s act as root‑specific oxygen sensors that prime epigenetic tolerance mechanisms.

hypoxia root meristem H3K4 trimethylation KDM7 demethylase Arabidopsis
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