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AI-summarized plant biology research papers from bioRxiv

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Multi-Level Characterization Reveals Divergent Heat Response Strategies Across Wheat Genotypes of Different Ploidy

Authors: Arenas-M, A., Mino, I., Uauy, C., Calderini, D. F., Canales, J.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.701169

Category: Plant Biology

Model Organism: Multi-species

AI Summary

Field experiments combined with RNA sequencing revealed that wheat ploidy influences heat stress resilience, with tetraploid T. turgidum showing the smallest yield loss and hexaploid T. aestivum mounting the largest transcriptional response. Ploidy-dependent differences were observed in differential gene expression, alternative splicing—including hexaploid-specific exon skipping of NF‑YB—and co‑expression networks linked to grain traits, highlighting candidate pathways for breeding heat‑tolerant wheat.

heat stress wheat ploidy RNA sequencing differential gene expression alternative splicing

Ultra large-scale 2D clinostats uncover environmentally derived variation in tomato responses to simulated microgravity

Authors: Hostetler, A. N., Kennebeck, E., Reneau, J. W., Birtell, E., Caldwell, D. L., Iyer-Pascuzzi, A. S., Sparks, E. E.

Date: 2026-01-13 · Version: 2
DOI: 10.1101/2025.05.16.654566

Category: Plant Biology

Model Organism: Solanum lycopersicum (tomato)

AI Summary

The study employed ultra large‑scale 2D clinostats to grow tomato (Solanum lycopersicum) plants beyond the seedling stage under simulated microgravity and upright control conditions across five sequential trials. Simulated microgravity consistently affected plant growth, but the magnitude and direction of the response varied among trials, with temperature identified as a significant co‑variant; moderate heat stress surprisingly enhanced growth under simulated microgravity. These results highlight the utility of large‑scale clinostats for dissecting interactions between environmental factors and simulated microgravity in plant development.

simulated microgravity ultra large-scale clinostat tomato (Solanum lycopersicum) heat stress plant growth interaction

The STA1-DOT2 interaction promotes nuclear speckle formation and splicing robustness in growth and heat stress responses

Authors: Kim, H., Yu, K.-j., Park, S. Y., Seo, D. H., Jeong, D.-H., Kim, W. T., Yun, D.-J., Lee, B.-h.

Date: 2026-01-12 · Version: 1
DOI: 10.64898/2026.01.11.698856

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that the interaction between spliceosomal proteins STA1 and DOT2 controls nuclear speckle organization, pre‑mRNA splicing efficiency, and heat‑stress tolerance in Arabidopsis thaliana. A missense mutation in DOT2 restores the weakened STA1‑DOT2 interaction in the sta1‑1 mutant, linking interaction strength to speckle formation and transcriptome‑wide intron retention under heat stress, while pharmacological inhibition of STA1‑associated speckles reproduces the mutant phenotypes. These findings reveal a heat‑sensitive interaction node that couples spliceosome assembly to nuclear speckle dynamics and splicing robustness.

spliceosome nuclear speckles STA1‑DOT2 interaction heat stress Arabidopsis thaliana

Investigating the apical notch, apical dominance and meristem regeneration in Marchantia polymorpha.

Authors: Marron, A. O.

Date: 2026-01-10 · Version: 5
DOI: 10.1101/2024.02.04.575544

Category: Plant Biology

Model Organism: Marchantia polymorpha

AI Summary

Using laser ablation microscopy, the study dissected the role of the first cell row and a contiguous stem cell quorum in the apical notches of germinating Marchantia gemmae, revealing that these cells are essential for meristem activity and that apical notches communicate via auxin‑mediated signals to regulate dominance and regeneration. The findings support a model of intra‑, inter‑, and extra‑notch communication governing meristem formation and maintenance in Marchantia.

meristem maintenance apical dominance laser ablation microscopy auxin signaling Marchantia gemma

MATERNAL AUTOPHAGY CONTRIBUTES TO GRAIN YIELD IN MAIZE

Authors: Tang, J., Avin-Wittenberg, T., Vollbrecht, E., Bassham, D.

Date: 2025-12-31 · Version: 1
DOI: 10.64898/2025.12.30.697098

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study shows that maize plants carrying autophagy-defective atg10 mutations exhibit delayed flowering and significant reductions in kernel size, weight, and number, culminating in lower grain yield. Reciprocal crossing experiments reveal that the maternal genotype, rather than the seed genotype, primarily drives the observed kernel defects, suggesting impaired nutrient remobilization from maternal tissues during seed development.

autophagy atg10 mutant maize yield maternal effect nutrient remobilization

The interplay between autophagy and the carbon/nitrogen ratio as key modulator of the auxin-dependent chloronema-caulonema developmental transition in Physcomitrium patens.

Authors: Pettinari, G., Liberatore, F., Mary, V., Theumer, M., Lascano, R., Saavedra, L. L.

Date: 2025-12-29 · Version: 1
DOI: 10.64898/2025.12.28.696759

Category: Plant Biology

Model Organism: Physcomitrium patens

AI Summary

Using the bryophyte Physcomitrium patens, the study shows that loss of autophagy enhances auxin‑driven caulonemata differentiation and colony expansion under low nitrogen or imbalanced carbon/nitrogen conditions, accompanied by higher internal IAA, reduced PpPINA expression, and up‑regulated RSL transcription factors. Autophagy appears to suppress auxin‑induced differentiation during nutrient stress, acting as a hub that balances metabolic cues with hormonal signaling.

autophagy auxin signaling carbon/nitrogen ratio Physcomitrium patens caulonemata development

Do stomatal movements have a limited dynamic range?

Authors: Muraya, F., Siqueira, J. A., Very, A.-A., Roelfsema, R.

Date: 2025-12-26 · Version: 1
DOI: 10.64898/2025.12.22.695892

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study examined the roles of AtKUP2, AtKUP6, AtKUP8, and GORK potassium transport proteins in guard cell function by performing gas-exchange measurements on mature Arabidopsis leaves. Loss of KUP2/6/8 reduced stomatal conductance, whereas a GORK loss‑of‑function mutant showed increased conductance, yet the magnitude of light‑ and ABA‑induced transpiration changes remained similar across genotypes, suggesting a limited dynamic range for rapid stomatal movements that relies on small ionic osmolytes.

stomatal conductance potassium transporters GORK channel AtKUP2/6/8 Arabidopsis

Dynamic regulation of protein homeostasis underlies acquiredthermotolerance in Arabidopsis

Authors: Bajaj, M., Allu, A. D., Rao, B. J.

Date: 2025-12-26 · Version: 3
DOI: 10.1101/2023.08.04.552042

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

Thermopriming enhances heat stress tolerance by orchestrating protein maintenance pathways: it activates the heat shock response (HSR) via HSFA1 and the unfolded protein response (UPR) while modulating autophagy to clear damaged proteins. Unprimed seedlings cannot mount these responses, leading to proteostasis collapse, protein aggregation, and death, highlighting the primacy of HSR and protein maintenance over clearance mechanisms.

thermopriming heat shock response unfolded protein response autophagy proteostasis

Exogenous auxins for proline regulation in heat-stressed plants

Authors: Kaleh, A. M., Whalen, J. K.

Date: 2025-12-22 · Version: 1
DOI: 10.64898/2025.12.20.695708

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The abstract proposes that microbial indole-3-acetic acid (IAA) enhances plant thermotolerance by regulating proline metabolism, coordinating early osmoprotective synthesis with later catabolism to support growth and redox balance during heat stress. This regulation is hypothesized to involve integration of auxin perception (HSP90‑TIR1), MAPK signaling (MPK‑IAA8), mitochondrial redox components (SSR1, HSCA2) and interactions with abscisic acid and ethylene, offering a framework for using auxin‑producing microbes to boost heat resilience.

microbial indole-3-acetic acid thermomorphogenesis proline metabolism auxin signaling heat stress resilience

Alternative splicing of PIF4 regulates plant development under heat stress

Authors: Gonzalez, M. N., Alary, B., Szakonyi, D., Laloum, T., Duque, P., Martin, G.

Date: 2025-12-18 · Version: 1
DOI: 10.64898/2025.12.17.694898

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identified a heat‑responsive exon‑skipping event in the basic Helix‑Loop‑Helix domain of the transcription factor PIF4, which reduces PIF4 activity and promotes photomorphogenic traits in etiolated seedlings. This reveals a novel post‑transcriptional mechanism by which plants modulate PIF4 function during heat stress.

PIF4 alternative splicing heat stress photomorphogenesis post‑transcriptional regulation
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