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Latest 14 Papers

NT-C2-Dependent Phosphoinositide Binding Controls PLASTID MOVEMENT IMPAIRED1 Localization and Function

Authors: Cieslak, D., Staszalek, Z., Hermanowicz, P., Łabuz, J. M., Dobrowolska, G., Sztatelman, O.

Date: 2025-12-31 · Version: 1
DOI: 10.64898/2025.12.30.697064

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identifies the extended NT‑C2 domain of Plastid Movement Impaired 1 (PMI1) as the main membrane‑binding module that interacts with PI4P and PI(4,5)P2, requiring basic residues for plasma‑membrane association. Calcium binding by the NT‑C2 domain modulates its phosphoinositide preference, and cytosolic Ca2+ depletion blocks blue‑light‑induced PMI1 redistribution, indicating that both the NT‑C2 domain and adjacent intrinsically disordered regions are essential for PMI1’s role in chloroplast movement.

chloroplast movement PMI1 NT-C2 domain phosphoinositide binding calcium signaling

CLPC2 plays specific roles in CLP complex-mediated regulation of growth, photosynthesis, embryogenesis and response to growth-promoting microbial compounds

Authors: Leal-Lopez, J., Bahaji, A., De Diego, N., Tarkowski, P., Baroja-Fernandez, E., Munoz, F. J., Almagro, G., Perez, C. E., Bastidas-Parrado, L. A., Loperfido, D., Caporalli, E., Ezquer, I., Lopez-Serrano, L., Ferez-Gomez, A., Coca-Ruiz, V., Pulido, P., Morcillo, R. J. L., Pozueta-Romero, J.

Date: 2025-11-28 · Version: 1
DOI: 10.1101/2025.11.25.690394

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that the plastid chaperone CLPC2, but not its paralogue CLPC1, is essential for Arabidopsis responsiveness to microbial volatile compounds and for normal seed and seedling development. Loss of CLPC2 alters the chloroplast proteome, affecting proteins linked to growth, photosynthesis, and embryogenesis, while overexpression of CLPC2 mimics CLPC1 deficiency, highlighting distinct functional roles within the CLP protease complex.

CLPC2 microbial volatile compounds chloroplast CLP protease proteomics Arabidopsis thaliana

Ca2+ signature-dependent control of auxin sensitivity in Arabidopsis

Authors: Song, H., Baudon, A., Freund, M., Randuch, M., Pencik, A., Ondrej, N., He, Z., Kaufmann, K., Gilliham, M., Friml, J., Hedrich, R., Huang, S.

Date: 2025-10-05 · Version: 1
DOI: 10.1101/2025.10.04.680446

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study uses an optogenetic ChannelRhodopsin 2 variant (XXM2.0) to generate defined cytosolic Ca²⁺ transients in Arabidopsis root cells, revealing that these Ca²⁺ signatures suppress auxin‑induced membrane depolarization, Ca²⁺ spikes, and auxin‑responsive transcription, leading to reversible inhibition of cell division and elongation. This demonstrates that optogenetically imposed Ca²⁺ signals act as dynamic regulators of auxin sensitivity in roots.

auxin signaling calcium signaling optogenetics Arabidopsis root cell division inhibition

Cis-regulatory architecture downstream of FLOWERING LOCUS T underlies quantitative control of flowering

Authors: Zhou, H.-R., Doan, D. T. H., Hartwig, T., Turck, F.

Date: 2025-09-25 · Version: 1
DOI: 10.1101/2025.09.23.678055

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study used CRISPR/Cas9 to edit the downstream region of the Arabidopsis thaliana FLOWERING LOCUS T (FT) gene, identifying a 2.3‑kb segment containing the Block E enhancer as crucial for normal FT expression and flowering. Fine‑scale deletions pinpointed a 63‑bp core module with CCAAT‑ and G‑boxes, and revealed a cryptic CCAAT‑box that becomes active when repositioned, highlighting the importance of local chromatin context and motif arrangement for enhancer function.

FLOWERING LOCUS T enhancer architecture cis‑regulatory logic CRISPR/Cas9 chromatin accessibility

Unveiling the molecular identity of plant autophagic compartments: A proteo-lipidomic study in Arabidopsis thaliana

Authors: Lupette, J., Chambaud, C., Buridan, M., Castets, J., Wattelet-Boyer, V., Toboso Moreno, I., Kosuth, T., Yatim, C., Dittrich-Domergue, F., Gros, V., Jouhet, J., Claverol, S., Herice, C., Melser, S., Genva, M., Fouillen, L., Bessoule, J.-J., Domergue, F., Bernard, A.

Date: 2025-08-28 · Version: 1
DOI: 10.1101/2025.08.25.671700

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study introduces a native‑condition method combining cell fractionation and immuno‑isolation to purify autophagic compartments from Arabidopsis, followed by proteomic and lipidomic characterisation of the isolated phagophore membranes. Proteomic profiling identified candidate proteins linked to autophagy, membrane remodeling, vesicular trafficking and lipid metabolism, while lipidomics revealed a predominance of glycerophospholipids, especially phosphatidylcholine and phosphatidylglycerol, defining the unique composition of plant phagophores.

autophagy phagophore membrane proteomics lipidomics membrane remodeling

Jasmonate Primes Plant Responses to Extracellular ATP through Purinoceptor P2K1

Authors: Jewell, J. B., Carlton, A., Tolley, J. P., Bartley, L. E., Tanaka, K.

Date: 2025-08-12 · Version: 2
DOI: 10.1101/2024.11.07.622526

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that jasmonate (JA) enhances Arabidopsis thaliana responses to extracellular ATP (eATP) by upregulating the eATP receptor P2K1 and amplifying eATP‑induced cytosolic Ca²⁺ spikes and transcriptional reprogramming in a COI1‑dependent manner, whereas salicylic acid pretreatment suppresses these responses. These findings reveal a JA‑mediated priming mechanism that potentiates eATP signaling during stress.

extracellular ATP jasmonate signaling P2K1 receptor COI1 calcium signaling

The CATION CALCIUM EXCHANGER 4 (CCX4) regulates LRX1-related root hair development through Ca2+ homeostasis

Authors: Hou, X., Tortora, G., Herger, A., Buratti, S., Dobrev, P. I., Vaculikov, R., Lacek, J., Sotiropoulos, A. G., Kadler, G., Schaufelberger, M., Candeo, A., Bassi, A., Wicker, T., Costa, A., Ringli, C.

Date: 2025-06-27 · Version: 1
DOI: 10.1101/2025.06.25.660713

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identified a suppressor mutation (sune42) in the Golgi-localized Ca2+ transporter CCX4 that alleviates the dominant‑negative root hair phenotype caused by the extensin‑less LRX1ΔE14 protein in Arabidopsis. Detailed Ca2+ imaging showed that LRX1ΔE14 disrupts tip‑focused cytoplasmic Ca2+ oscillations, a defect rescued by the sune42 mutation, highlighting the role of Golgi‑mediated Ca2+ homeostasis in root hair growth.

calcium signaling root hair development LRX1 extensin domain CCX4 Golgi transporter Ca2+ homeostasis

A CRISPR/Cas9-induced restoration of bioluminescence reporter system for single-cell gene expression analysis in plants

Authors: Ueno, R., Ito, S., Oyama, T.

Date: 2025-05-30 · Version: 1
DOI: 10.1101/2025.05.27.656507

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study introduces a CRISPR/Cas9‑based restoration system (CiRBS) that reactivates a disabled luciferase reporter (LUC40Ins26bp) in transgenic Arabidopsis, enabling long‑term single‑cell bioluminescence monitoring. Restoration occurs within 24 h after particle‑bombardment‑mediated CRISPR delivery, with ~7 % of cells regaining luminescence and most restored cells carrying a single correctly edited chromosome, facilitating reliable analysis of cellular gene‑expression heterogeneity.

CRISPR/Cas9 bioluminescence reporter particle bombardment single‑cell gene expression Arabidopsis thaliana

SNRK3.15 is a crucial component of the sulfur deprivation response in Arabidopsis thaliana

Authors: Apodiakou, A., Heyneke, E., Alseekh, S., Pinsorn, P., Metzger, S., Kopriva, S., Schulze, W., Hoefgen, R., Whitcomb, S. J.

Date: 2025-05-03 · Version: 1
DOI: 10.1101/2025.04.29.651231

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identifies the serine/threonine protein kinase CIPK14/SNRK3.15 as a regulator of sulfate‑deficiency responses in Arabidopsis thaliana seedlings, with mutants showing diminished early adaptive and later salvage responses under sulfur starvation. While snrk3.15 mutants exhibit no obvious phenotype under sufficient sulfur, the work provides a novel proteomic dataset comparing wild‑type and mutant seedlings under sulfur limitation.

sulfate deprivation CIPK14/SNRK3.15 Arabidopsis thaliana kinase signaling proteomics

MLO-mediated Ca2+ influx regulates root hair tip growth in Arabidopsis

Authors: Ogawa, S. T., Zhang, W., Staiger, C. J., Kessler, S. A.

Date: 2025-04-10 · Version: 1
DOI: 10.1101/2025.04.08.647801

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that constitutively active MLO (faNTA) can rescue the fer-4 root‑hair bursting and polarity defects, restoring tip‑focused cytosolic Ca2+ oscillations and ROS accumulation, highlighting a FERONIA‑MLO signaling module that governs Ca2+ influx and ROS production during root‑hair tip growth. Genetic analysis of mlo15-4 further confirms MLO15 as a key regulator of these Ca2+ and ROS dynamics. The findings suggest MLO proteins act downstream of FER to coordinate calcium and ROS signals essential for root‑hair integrity.

root hair tip growth calcium signaling reactive oxygen species FERONIA receptor kinase MLO proteins
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