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AI-summarized plant biology research papers from bioRxiv

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An Axiom SNP genotyping array for potato: development, evaluation and applications

Authors: Baig, N., Thelen, K., Ayenan, M. A. T., Hartje, S., Obeng-Hinneh, E., Zgadzaj, R., Renner, J., Muders, K., Truberg, B., Rosen, A., Prigge, V., Bruckmueller, J., Luebeck, J., Van Inghelandt, D., Stich, B.

Date: 2025-08-20 · Version: 1
DOI: 10.1101/2025.08.17.670748

Category: Plant Biology

Model Organism: Solanum tuberosum

AI Summary

The study reports the creation and validation of a high‑density Axiom SNP array for Solanum tuberosum, based on 10X Genomics sequencing of 108 diverse clones and integration of existing Illumina markers. The array demonstrated high reproducibility and, after filtering, provided 206,616 informative markers for population structure analysis, GWAS of polyphenol oxidase activity, and genomic prediction with accuracies up to 0.86.

high-density SNP array potato (Solanum tuberosum) genomic-assisted breeding GWAS polyphenol oxidase activity

An ERF transcription factor StPTI5, a novel regulator of endophyte community maintenance in potato

Authors: Lukan, T., Kraigher, B., Pogacar, K., Stare, K., Grubar Kovacic, T., Zagorscak, M., Petek, M., Stefanic, P., Vozelj, A., Levak, V., Mahkovec Povalej, T., Garcia, J. M., Pozo, M. J., Mandic-Mulec, I., Gruden, K.

Date: 2025-04-24 · Version: 1
DOI: 10.1101/2025.04.24.650297

Category: Plant Biology

Model Organism: Solanum tuberosum

AI Summary

The study shows that the ERF transcription factor PTI5, previously identified as a susceptibility factor, is strongly induced during Bacillus subtilis biofilm establishment on potato roots and modulates ethylene‑dependent immune signaling. Silencing PTI5 enhances bacterial abundance and increases colonization by the arbuscular mycorrhizal fungus Rhizophagus irregularis, indicating PTI5 restricts both pathogenic and beneficial microbial interactions. These findings provide mechanistic insight for managing beneficial plant‑microbe relationships in crops.

PTI5 ethylene signaling plant immunity beneficial microbes Solanum tuberosum