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AI-summarized plant biology research papers from bioRxiv

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Latest 48 Papers

Mobility-enhanced virus vectors enable meristem genome editing in model and crop plants

Authors: Chiu, K. T., Higgs, H., Antunes, M. S., Lin, Y. T., McGarry, R. C.

Date: 2025-11-19 · Version: 1
DOI: 10.1101/2025.11.19.689159

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study engineered Tobacco rattle virus vectors incorporating distinct RNA secondary structures as mobility factors to improve guide RNA delivery to plant meristems. Using Nicotiana benthamiana plants expressing Cas9, optimal virus constructs were identified that generated both somatic and heritable edits, and these constructs were successfully applied to edit the emerging oilseed crop pennycress (Thlaspi arvense).

CRISPR/Cas9 Tobacco rattle virus (TRV) RNA mobility factors meristem editing virus-mediated gRNA delivery

Developing a Molecular Toolkit to ENABLE all to apply CRISPR/Cas9-based Gene Editing in planta

Authors: Abate, B. A., Hahn, F., Chirivi, D., Betti, C., Fornara, F., Molloy, J. C., Krainer, K. M. C.

Date: 2025-11-09 · Version: 1
DOI: 10.1101/2025.11.09.687425

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The authors introduce the ENABLE(R) Gene Editing in planta toolkit, a streamlined two‑step cloning system for creating CRISPR/Cas9 knockout vectors suitable for transient or stable transformation. Validation was performed in Oryza sativa protoplasts and Arabidopsis thaliana plants, and the toolkit includes low‑cost protocols aimed at facilitating adoption in the Global South.

CRISPR/Cas9 plant gene editing low‑cost cloning Global South agriculture ENABLE(R) toolkit

Golden Promise-rapid, a fast-cycling barley genotype with high transformation efficiency

Authors: Buchmann, G., Haraldsson, E. B., Schüller, R., Rütjes, T., Walla, A. A., von Korff Schmising, M., Liu, S.

Date: 2025-10-31 · Version: 1
DOI: 10.1101/2025.10.31.685778

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The authors created a fast‑cycling, isogenic barley line (GP‑rapid) by introgressing the wild‑type Ppd‑H1 allele from Igri into the Golden Promise cultivar and performing two backcrosses to limit the donor genome, achieving a 25% reduction in generation time under speed‑breeding conditions while retaining high transformation efficiency. CRISPR/Cas9‑mediated editing of Ppd‑H1 showed regeneration and transformation rates comparable to the original Golden Promise, establishing GP‑rapid as a rapid platform for transgenic and gene‑edited barley research.

Golden Promise Ppd-H1 speed breeding CRISPR/Cas9 transformation efficiency

Enterobacter sp. SA187-induced coordinated regulation of high-affinity nitrate transporters and ethylene signaling enhances nitrogen content and plant growth under low nitrate

Authors: Ilyas, A., Mauve, C., Decouard, B., Caius, J., Paysant-Leroux, C., Hodges, M., de Zelicourt, A.

Date: 2025-10-26 · Version: 2
DOI: 10.1101/2025.06.23.660384

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study shows that inoculation with the non‑diazotrophic bacterium Enterobacter sp. SA187 significantly improves Arabidopsis thaliana growth under low nitrate conditions by increasing fresh weight, primary root length, and lateral root density, while enhancing nitrate accumulation and reducing shoot C:N ratios. Transcriptomic and mutant analyses reveal that these benefits depend on ethylene signaling and the activity of high‑affinity nitrate transporters NRT2.5 and NRT2.6, indicating an ethylene‑mediated, HATS‑dependent reprogramming of nitrogen uptake.

Enterobacter sp. SA187 low nitrate nutrition ethylene signaling high-affinity nitrate transporters plant‑growth‑promoting bacteria

Engineering compact Physalis peruviana (goldenberry) to promote its potential as a global crop

Authors: Santo Domingo, M., Fitzgerald, B., Robitaille, G. M., Ramakrishnan, S., Swartwood, K., Karavolias, N., Schatz, M., Van Eck, J., Lippman, Z.

Date: 2025-10-24 · Version: 2
DOI: 10.1101/2025.08.15.670557

Category: Plant Biology

Model Organism: Physalis peruviana

AI Summary

The study applied CRISPR/Cas9 gene editing to Physalis peruviana to modify plant‑architecture genes and create a compact growth ideotype. This compact phenotype is intended to increase per‑plot yield and support future breeding efforts for this nutritionally valuable minor crop.

Physalis peruviana Goldenberry CRISPR/Cas9 plant architecture compact ideotype

Ethylene receptors are functionally conserved in calcium permeability across the green lineage

Authors: Yu, D., Ju, C., Feng, C., Wang, Y., Sun, Y., Gao, L., Liu, Z., Li, C., Wang, Y., He, X., Su, H., Hu, M., Meng, J., Tian, S., Liu, L., Hou, C., Kong, D., Li, L.

Date: 2025-10-20 · Version: 1
DOI: 10.1101/2025.10.20.683334

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reveals that Arabidopsis ethylene receptors ETR1 and ERS1 function as Ca²⁺-permeable channels, with ETR1 specifically mediating ethylene‑induced cytosolic Ca²⁺ spikes that influence hypocotyl elongation. Homologous receptors from diverse land plants and algae also show Ca²⁺ permeability, and ethylene further enhances this activity, indicating a conserved regulatory role across the green lineage.

ethylene signaling Ca2+ permeability ETR1 receptor Arabidopsis thaliana conserved plant signaling

Ethylene-induced host responses enhance resistance against the root-parasitic plant Phelipanche aegyptiaca

Authors: Park, S., Yang, C., Westwood, J.

Date: 2025-10-06 · Version: 1
DOI: 10.1101/2025.10.05.680554

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study demonstrates that ethylene signaling contributes to host resistance against the root parasitic plant Phelipanche aegyptiaca, as both water stress and parasitism activate ethylene responses in Arabidopsis roots. Application of the ethylene precursor ACC reduced parasite attachment, and mutants in ethylene signaling components (ETR1, CTR1) showed altered tolerance, highlighting ethylene-mediated defenses as a potential strategy for crop protection.

Phelipanche aegyptiaca ethylene signaling host resistance parasitic weed Arabidopsis thaliana

Gene editing of Nicotiana benthamiana architecture for space-efficient production of recombinant proteins in controlled environments

Authors: Giroux, B., LeBreux, K., Feyzeau, L., Goulet, M.-C., Goulet, C., Michaud, D.

Date: 2025-10-02 · Version: 1
DOI: 10.1101/2025.10.01.679797

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

Using CRISPR‑Cas9, researchers knocked down CCD7 or CCD8 in Nicotiana benthamiana to suppress strigolactone synthesis, producing compact plants with a 45%–50% smaller spatial footprint while preserving recombinant protein yields (GFP and rituximab). The mutants showed altered leaf proteome, auxin/cytokinin balance, and metabolic fluxes without affecting overall growth rate, demonstrating suitability for indoor vertical farming biopharma production.

CRISPR-Cas9 Nicotiana benthamiana strigolactone depletion vertical farming compact phenotype

Polyphenol oxidase mutant Nicotiana benthamiana plants increase yield and purity of recombinant proteins and enable studies of proteins in their native state.

Authors: Zheng, K., van der Hoorn, R. A. L.

Date: 2025-09-30 · Version: 1
DOI: 10.1101/2025.09.28.679031

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The authors created two Nicotiana benthamiana lines with CRISPR-mediated knockouts of two polyphenol oxidase genes, which exhibited slightly accelerated growth and retained normal transient GFP expression. These ppo-deficient plants produced leaf extracts that remained greener with markedly reduced enzymatic browning and protein crosslinking, leading to a nearly fourfold increase in yield and improved purity of a transiently expressed His‑tagged tomato protease. The study demonstrates that PPO depletion can enhance recombinant protein recovery from plant tissue.

Nicotiana benthamiana polyphenol oxidase knockout agroinfiltration recombinant protein purification enzymatic browning

Type one protein phosphatases (TOPPs) catalyze EIN2 dephosphorylation to regulate ethylene signaling in Arabidopsis

Authors: Su, M., Qin, Q., Zhang, J., Li, Y., Ye, A., Wang, S., Hou, S.

Date: 2025-09-29 · Version: 1
DOI: 10.1101/2025.09.26.678716

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study uncovers a reciprocal regulatory loop between type one protein phosphatases (TOPPs) and EIN2 in ethylene signaling, showing that ethylene induces TOPPs expression and that TOPPs dephosphorylate EIN2 at S655 to stabilize it and promote nuclear accumulation. TOPPs act upstream of EIN2, while EIN3/EIL1 transcriptionally activates TOPPs, linking dephosphorylation to enhanced ethylene responses and improved salt tolerance.

TOPPs EIN2 ethylene signaling dephosphorylation salt tolerance
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