Genetius

AI-summarized plant biology research papers from bioRxiv

View Trends

Latest 87 Papers

Molecular basis of delayed leaf senescence induced by short-term treatment with low phosphate in rice

Authors: Martin-Cardoso, H., Bundo, M., Garcia-Molina, A., San Segundo, B.

Date: 2026-01-24 · Version: 1
DOI: 10.64898/2026.01.23.701354

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study demonstrates that short‑term low phosphate treatment delays leaf senescence in rice by increasing photosynthetic pigments, enhancing antioxidant enzyme activities, and reducing oxidative damage, whereas high phosphate accelerates senescence. CRISPR/Cas9 editing of MIR827 to lower Pi levels also postpones senescence, while overexpression of MIR827 or MIR399, which raises Pi, speeds it up. Transcriptomic profiling reveals coordinated changes in senescence‑associated and metabolic pathways underlying the low‑phosphate response.

phosphate deficiency leaf senescence Oryza sativa CRISPR/Cas9 transcriptomic analysis

WITHDRAWN: The NLR immune receptor Roq1 recognizes the Pseudomonas syringae HopAG1 effector via its Nudix domain

Authors: Gorecka, M., Jonak, M., Grech-Baran, M., Steczkiewicz, K., Ochoa, J. C., Krepski, T., Zembek, P. B., Pawłowski, K., Krzymowska, M.

Date: 2026-01-19 · Version: 2
DOI: 10.1101/2025.06.13.659573

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study demonstrates that the Nicotiana benthamiana NLR Roq1, previously known to recognize the XopQ/HopQ1/RipB effector family, also detects the structurally distinct HopAG1 effector, leading to reduced bacterial growth and disease symptoms. Roq1-HopAG1 interaction was confirmed by co‑immunoprecipitation and attributed to the Nudix domain of HopAG1 binding a similar receptor interface as XopQ, suggesting broader effector recognition potential for Roq1 and other TNLs.

NLR Roq1 HopAG1 Nudix domain Nicotiana benthamiana

Initiation of asexual reproduction by the AP2/ERF gene GEMMIFER in Marchantia polymorpha

Authors: Takahashi, G., Yamaya, S., Romani, F., Bonter, I., Ishizaki, K., Shimamura, M., Kiyosue, T., Haseloff, J., Hirakawa, Y.

Date: 2026-01-16 · Version: 1
DOI: 10.64898/2026.01.16.699827

Category: Plant Biology

Model Organism: Marchantia polymorpha

AI Summary

The study identifies the AP2/ERF transcription factor GEMMIFER (MpGMFR) as essential for asexual reproduction in the liverwort Marchantia polymorpha, showing that loss of MpGMFR via genome editing or amiRNA abolishes gemma and gemma cup formation, while dexamethasone‑induced activation triggers their development. Transient strong activation of MpGMFR initiates gemma initial cells at the meristem, which mature into functional gemmae, indicating MpGMFR is both necessary and sufficient for meristem‑derived asexual propagule formation.

MpGMFR AP2/ERF gemmae Marchantia polymorpha asexual reproduction

Features affecting Cas9-Induced Editing Efficiency and Patterns in Tomato: Evidence from a Large CRISPR Dataset

Authors: Cucuy, A., Ben-Tov, D., Melamed-Bessudo, C., Honig, A., Cohen, B. A., Levy, A. A.

Date: 2026-01-07 · Version: 1
DOI: 10.64898/2026.01.06.696182

Category: Plant Biology

Model Organism: Solanum lycopersicum

AI Summary

The study generated a dataset of 420 sgRNAs targeting promoters, exons, and introns of 137 tomato genes in protoplasts, linking editing efficiency to chromatin accessibility, genomic context, and sequence features. Open chromatin sites showed higher editing rates, while transcriptional activity had little effect, and a subset of guides produced near‑complete editing with microhomology‑mediated deletions. Human‑trained prediction models performed poorly, highlighting the need for plant‑specific guide design tools.

CRISPR/Cas9 ATAC-seq chromatin accessibility microhomology‑mediated end joining tomato

MATERNAL AUTOPHAGY CONTRIBUTES TO GRAIN YIELD IN MAIZE

Authors: Tang, J., Avin-Wittenberg, T., Vollbrecht, E., Bassham, D.

Date: 2025-12-31 · Version: 1
DOI: 10.64898/2025.12.30.697098

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study shows that maize plants carrying autophagy-defective atg10 mutations exhibit delayed flowering and significant reductions in kernel size, weight, and number, culminating in lower grain yield. Reciprocal crossing experiments reveal that the maternal genotype, rather than the seed genotype, primarily drives the observed kernel defects, suggesting impaired nutrient remobilization from maternal tissues during seed development.

autophagy atg10 mutant maize yield maternal effect nutrient remobilization

The interplay between autophagy and the carbon/nitrogen ratio as key modulator of the auxin-dependent chloronema-caulonema developmental transition in Physcomitrium patens.

Authors: Pettinari, G., Liberatore, F., Mary, V., Theumer, M., Lascano, R., Saavedra, L. L.

Date: 2025-12-29 · Version: 1
DOI: 10.64898/2025.12.28.696759

Category: Plant Biology

Model Organism: Physcomitrium patens

AI Summary

Using the bryophyte Physcomitrium patens, the study shows that loss of autophagy enhances auxin‑driven caulonemata differentiation and colony expansion under low nitrogen or imbalanced carbon/nitrogen conditions, accompanied by higher internal IAA, reduced PpPINA expression, and up‑regulated RSL transcription factors. Autophagy appears to suppress auxin‑induced differentiation during nutrient stress, acting as a hub that balances metabolic cues with hormonal signaling.

autophagy auxin signaling carbon/nitrogen ratio Physcomitrium patens caulonemata development

Dynamic regulation of protein homeostasis underlies acquiredthermotolerance in Arabidopsis

Authors: Bajaj, M., Allu, A. D., Rao, B. J.

Date: 2025-12-26 · Version: 3
DOI: 10.1101/2023.08.04.552042

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

Thermopriming enhances heat stress tolerance by orchestrating protein maintenance pathways: it activates the heat shock response (HSR) via HSFA1 and the unfolded protein response (UPR) while modulating autophagy to clear damaged proteins. Unprimed seedlings cannot mount these responses, leading to proteostasis collapse, protein aggregation, and death, highlighting the primacy of HSR and protein maintenance over clearance mechanisms.

thermopriming heat shock response unfolded protein response autophagy proteostasis

Membrane-binding domains define REMORIN phylogeny and provide a predicted structural basis for distinctive membrane nano-environments

Authors: Biermann, D., Gronnier, J.

Date: 2025-12-23 · Version: 1
DOI: 10.64898/2025.12.22.695504

Category: Plant Biology

Model Organism: General

AI Summary

The study reveals that REMORIN protein evolution is primarily driven by diversification of their conserved C-terminal domain, defining four major clades. Structural bioinformatics predicts a common membrane‑binding interface with diverse curvatures and lengths, and suggests that some REMs can form C‑terminal‑mediated oligomers, adding complexity to membrane organization.

REMORIN proteins C-terminal domain membrane nano-organization phylogenetic analysis structural bioinformatics

FLOWERING LOCUS T genes MtFTb1 and MtFTb2 act redundantly to promote flowering under long days in Medicago truncatula

Authors: Perez Santangelo, S., Macknight, R. C.

Date: 2025-12-17 · Version: 1
DOI: 10.64898/2025.12.15.694442

Category: Plant Biology

Model Organism: Medicago truncatula

AI Summary

The study identifies MtFTb1 and MtFTb2 as essential, redundant regulators of long‑day flowering in the legume Medicago truncatula, demonstrating that they are required for up‑regulating MtFTa1 under vernalised long‑day conditions. Using CRISPR/Cas9‑generated single and double mutants, the authors show that double mutants are specifically delayed in flowering under long days while retaining vernalization responsiveness, and transcriptomic analyses reveal that MtFTb1/2 activate MADS‑box genes and other flowering regulators.

flowering time FT genes Medicago truncatula CRISPR/Cas9 long‑day photoperiod

A SABATH family enzyme regulates development via the gibberellin-related pathway in the liverwort Marchantia polymorpha

Authors: Kawamura, S., Shimokawa, E., Ito, M., Nakamura, I., Kanazawa, T., Iwano, M., Sun, R., Yoshitake, Y., Yamaoka, S., Yamaguchi, S., Ueda, T., Kato, M., Kohchi, T.

Date: 2025-12-13 · Version: 1
DOI: 10.64898/2025.12.11.693594

Category: Plant Biology

Model Organism: Marchantia polymorpha

AI Summary

The study identified 12 SABATH methyltransferase genes in the liverwort Marchantia polymorpha and demonstrated that MpSABATH2 is crucial for normal thallus growth and gemma cup formation. Loss‑of‑function mutants displayed developmental phenotypes reminiscent of far‑red light responses, which were linked to gibberellin metabolism and could be partially rescued by inhibiting GA biosynthesis or supplying the GA precursor ent‑kaurenoic acid. These findings suggest that SABATH enzymes independently evolved regulatory roles in land‑plant development.

SABATH methyltransferases Marchantia polymorpha gibberellin metabolism far‑red light response developmental regulation
Page 1 of 9 Next