Latest 75 Papers

WITHDRAWN: The NLR immune receptor Roq1 recognizes the Pseudomonas syringae HopAG1 effector via its Nudix domain

Authors: Gorecka, M., Jonak, M., Grech-Baran, M., Steczkiewicz, K., Ochoa, J. C., Krepski, T., Zembek, P. B., Pawłowski, K., Krzymowska, M.

Date: 2026-01-19 · Version: 2
DOI: 10.1101/2025.06.13.659573

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study demonstrates that the Nicotiana benthamiana NLR Roq1, previously known to recognize the XopQ/HopQ1/RipB effector family, also detects the structurally distinct HopAG1 effector, leading to reduced bacterial growth and disease symptoms. Roq1-HopAG1 interaction was confirmed by co‑immunoprecipitation and attributed to the Nudix domain of HopAG1 binding a similar receptor interface as XopQ, suggesting broader effector recognition potential for Roq1 and other TNLs.

NLR Roq1 HopAG1 Nudix domain Nicotiana benthamiana

A drought stress-induced MYB transcription factor regulates pavement cell shape in leaves of European aspen (Populus tremula)

Authors: Liu, S., Doyle, S. M., Robinson, K. M., Rahneshan, Z., Street, N. R., Robert, S.

Date: 2026-01-16 · Version: 1
DOI: 10.64898/2026.01.16.699252

Category: Plant Biology

Model Organism: Populus tremula

AI Summary

The study examined leaf pavement cell shape complexity across a natural European aspen (Populus tremula) population, using GWAS to pinpoint the transcription factor MYB305a as a regulator of cell geometry. Functional validation showed that MYB305a expression is induced by drought and contributes to shape simplification, with cell complexity negatively correlated with water-use efficiency and climatic variables of the genotypes' origin.

leaf pavement cells Populus tremula MYB305a GWAS drought stress

Wheat diversity reveals new genomic loci and candidate genes for vegetation indices using genome-wide association analysis

Authors: Rustamova, S., Jahangirov, A., Leon, J., Naz, A. A., Huseynova, I.

Date: 2026-01-14 · Version: 1
DOI: 10.64898/2026.01.14.699455

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

A genome‑wide association study of 187 bread wheat genotypes identified 812 significant loci linked to 25 spectral vegetation indices under rainfed drought conditions, revealing a major QTL hotspot on chromosome 2A that accounts for up to 20% of variance in greenness and pigment traits. Candidate gene analysis at this hotspot uncovered stress‑responsive genes, demonstrating that vegetation indices are heritable digital phenotypes useful for selection and genetic analysis of drought resilience.

Triticum aestivum drought stress spectral vegetation indices GWAS QTL hotspot

Overexpression of PtaHDG11 enhances drought tolerance and suppresses trichome formation in Populus tremula x Populus alba

Authors: Fendel, A., Fladung, M., Bruegmann, T.

Date: 2026-01-13 · Version: 1
DOI: 10.64898/2026.01.12.699028

Category: Plant Biology

Model Organism: Populus tremula × Populus alba

AI Summary

The study identified the poplar homolog of Arabidopsis HDG11 and generated transgenic poplar hybrids overexpressing PtaHDG11. Constitutive expression conferred markedly improved drought tolerance, as evidenced by higher leaf water content, reduced oxidative damage, up‑regulation of antioxidant genes, and greater post‑stress biomass, while also causing a glabrous phenotype. These results highlight PtaHDG11 as a promising target for breeding drought‑resilient trees.

HDG11 drought tolerance Populus hybrid antioxidant genes transgenic overexpression

CRK5 preserves antioxidant homeostasis and prevents cell death during dark-induced senescence through inhibiting the salicylic acid signaling pathway

Authors: Kamran, M., Burdiak, P., Rusaczonek, A., Zarrin Ghalami, R., Karpinski, S.

Date: 2026-01-12 · Version: 1
DOI: 10.64898/2026.01.12.698963

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identifies the cysteine‑rich receptor‑like kinase CRK5 as a negative regulator of salicylic‑acid‑mediated cell death and a positive regulator of antioxidant homeostasis during dark‑induced leaf senescence in Arabidopsis. Loss‑of‑function crk5 mutants display accelerated senescence, elevated ROS and electrolyte leakage, and altered antioxidant enzyme activities, phenotypes that are rescued by suppressing SA biosynthesis or catabolism. Transcriptome analysis reveals extensive deregulation of senescence‑ and redox‑related genes, highlighting CRK5’s central role in coordinating hormonal and oxidative pathways.

dark-induced senescence salicylic acid signaling CRK5 receptor kinase reactive oxygen species antioxidant homeostasis

The CCCH Zinc Finger Gene PgCCCH50 from Pearl Millet Confers Drought and Salt Tolerance through an ABA-Dependent PgAREB1-PgCCCH50 Module

Authors: xie, z., zhu, J., Yu, G., Ma, X., Zhou, Y., Yan, H., Huang, L.

Date: 2025-12-25 · Version: 1
DOI: 10.64898/2025.12.23.696222

Category: Plant Biology

Model Organism: Pennisetum glaucum

AI Summary

The authors performed a genome-wide analysis of 53 CCCH zinc‑finger genes in pearl millet, identified seven stress‑responsive members and demonstrated that overexpressing PgC3H50 in Arabidopsis enhances drought and salt tolerance. They showed that the ABA‑responsive transcription factor PgAREB1 directly binds the PgC3H50 promoter, activating its expression, as confirmed by yeast one‑hybrid, dual‑luciferase and EMSA assays, defining a new PgAREB1‑PgC3H50 regulatory module.

CCCH zinc finger proteins drought tolerance salinity stress ABA signaling Pearl millet

GWAs reveals SUBER GENE1-mediated suberization via Type One Phosphatases

Authors: Han, J.-P., Lefebvre-Legendre, L., Yu, J., Capitao, M. B., Beaulieu, C., Gully, K., Shukla, V., Wu, Y., Boland, A., Nawrath, C., Barberon, M.

Date: 2025-12-12 · Version: 2
DOI: 10.1101/2025.05.06.652434

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

Using a forward genetic screen of 284 Arabidopsis thaliana accessions, the study identified extensive natural variation in root endodermal suberin and pinpointed the previously unknown gene SUBER GENE1 (SBG1) as a key regulator. GWAS and protein interaction analyses revealed that SBG1 controls suberin deposition by binding type‑one protein phosphatases (TOPPs), with disruption of this interaction or TOPP loss‑of‑function altering suberin levels, linking the pathway to ABA signaling.

suberin deposition Arabidopsis thaliana GWAS SBG1 TOPP phosphatases

Genetic Insights from Line x Tester Analysis of Maize Lethal Necrosis Testcrosses for Developing Multi-Stress-Resilient Hybrids in Sub-Saharan Africa

Authors: Gowda, M., Beyene, Y., L.M., S., Ogugo, V., Amadu, M. K., Chaikam, V.

Date: 2025-12-09 · Version: 1
DOI: 10.64898/2025.12.07.692857

Category: Plant Biology

Model Organism: Zea mays

AI Summary

A comprehensive multi‑environment trial of 437 maize testcross hybrids derived from 38 MLN‑tolerant lines and 29 testers identified additive genetic effects as the primary driver of grain yield, disease resistance, and drought tolerance. Strong general combining ability and specific combining ability patterns were uncovered, with top hybrids delivering up to 5.75 t ha⁻¹ under MLN pressure while maintaining high performance under optimum and drought conditions. The study provides a framework for selecting elite parents and exploiting both additive and non‑additive effects to develop resilient maize hybrids for sub‑Saharan Africa.

maize lethal necrosis (MLN) drought tolerance grain yield combining ability GGE biplot

Trichome formation in Nicotiana benthamiana is induced by Agrobacterium

Authors: Chen, J., Hands, P., Patel, M., Yang, L., Zhang, C., Smith, N., Luo, M., Ayliffe, M.

Date: 2025-12-05 · Version: 1
DOI: 10.64898/2025.12.02.691950

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study demonstrates that infiltrating Nicotiana benthamiana leaves with specific nopaline-type Agrobacterium tumefaciens strains dramatically increases local glandular trichome density within 15 days, an effect linked to the bacterial trans-zeatin synthase (tzs) gene that produces the cytokine trans‑zeatin. This simple Agrobacterium‑mediated approach enables direct comparison of high‑density trichome regions with adjacent isogenic tissue on the same leaf.

trichome density Agrobacterium infiltration trans‑zeatin synthase (tzs) cytokinin trans‑zeatin Nicotiana benthamiana

Cytokinin-mediated trichome initiation in Nicotiana benthamiana upon Agrobacterium tumefaciens infiltration

Authors: Saebel, R., Brand, A., Balcke, G. U., Syrowatka, F., Horn, C., Marillonnet, S., Tissier, A. F.

Date: 2025-11-26 · Version: 1
DOI: 10.1101/2025.11.23.690080

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

Infiltration of Nicotiana benthamiana leaves with Agrobacterium tumefaciens strain GV3101 carrying the pMP90 Ti plasmid triggers de novo formation of capitate glandular trichomes and elevates acyl‑sugar production, an effect absent with other strains. The responsible factor is the trans‑zeatin synthase (tzs) gene on pMP90, and exogenous application of cytokinins (trans‑zeatin or benzylaminopurine) alone can reproduce trichome induction, linking cytokinin signaling to trichome development. The study highlights that Agrobacterium-mediated transient assays can have unintended developmental and biochemical impacts, recommending strain testing to mitigate such effects.

Agrobacterium tumefaciens Nicotiana benthamiana glandular trichomes cytokinins trans‑zeatin synthase
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