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PHO2 suppresses arbuscular mycorrhizal symbiosis in high phosphate conditions

Authors: Birch, S., Perryman, S., Ellison, E., Foreman, N., Mekjan, N., Williams, A., Bate-Weldon, M., Ralfs, T., Pucker, B., Whiting, M., Hope, M. S., Wallington, E., Field, K., Choi, J.

Date: 2025-09-05 · Version: 1
DOI: 10.1101/2025.09.03.673468

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study identifies the rice E2 ubiquitin‑conjugating enzyme PHO2 as a key negative regulator of arbuscular mycorrhizal (AM) colonisation under high phosphate conditions. pho2 mutants in Oryza sativa (and Nicotiana benthamiana) maintain AM fungal entry and exhibit enhanced direct and symbiotic phosphate accumulation, linked to sustained expression of AM‑related genes despite phosphate sufficiency.

Arbuscular mycorrhizal symbiosis Phosphate starvation response PHO2 ubiquitin‑conjugating enzyme Oryza sativa Phosphate accumulation

Calcium-dependent protein kinases participate in RBOH-mediated sustained ROS burst during plant immune cell death

Authors: Hino, Y., Yoshioka, M., Adachi, H., Yoshioka, H.

Date: 2025-09-01 · Version: 1
DOI: 10.1101/2025.09.01.672762

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study demonstrates that calcium-dependent protein kinases NbCDPK4 and NbCDPK5 directly phosphorylate the NADPH oxidase NbRBOHB at Ser‑123, enhancing sustained ROS production during effector-triggered immunity in Nicotiana benthamiana. Constitutively active CDPKs also upregulate NbRBOHB transcription, and phosphorylation of Ser‑123 is amplified by Ca2+ influx triggered by an autoactive helper NLR (NRC4). These results define a NbCDPK‑NbRBOHB signaling module that links NLR activation to prolonged ROS bursts in ETI.

effector-triggered immunity calcium-dependent protein kinases NADPH oxidase reactive oxygen species Nicotiana benthamiana

Drought drives reversible disengagement of root-mycorrhizal symbiosis

Authors: Akmakjian, G. Z., Nozue, K., Nakayama, H., Borowsky, A. T., Morris, A. M., Baker, K., Canto-Pastor, A., Paszkowski, U., Sinha, N., Brady, S., Bailey-Serres, J.

Date: 2025-08-27 · Version: 1
DOI: 10.1101/2025.08.25.671999

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study shows that during drought, rice (Oryza sativa) downregulates nutrient acquisition and arbuscular mycorrhizal (AM) symbiosis genes, causing the fungal partner to enter metabolic quiescence and retract hyphae, but upon re-watering the symbiosis is rapidly reactivated. This reversible dynamic suggests that plant‑fungus mutualisms are fragile under fluctuating water availability.

drought stress arbuscular mycorrhizal symbiosis Oryza sativa nutrient acquisition regulation re-watering recovery

Ubiquitin-like SUMO protease expansion in rice (Oryza sativa)

Authors: Sue-ob, K., Zhang, C., Sharma, E., Bhosale, R., Sadanandom, A., Jones, A. R.

Date: 2025-08-25 · Version: 1
DOI: 10.1101/2025.08.20.671006

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study employed computational approaches to characterize the SUMOylation (ULP) machinery in Asian rice (Oryza sativa), analyzing phylogenetic relationships, transcriptional patterns, and protein structures across the reference genome, a population panel, and wild relatives. Findings reveal an expansion of ULP genes in cultivated rice, suggesting selection pressure during breeding and implicating specific ULPs in biotic and abiotic stress responses, providing resources for rice improvement.

SUMOylation ULP proteases Oryza sativa phylogenetic analysis stress response

Insights from controlled, comparative experiments highlight the limitations of using BSMV and FoMV for virus-enabled reverse genetics in rice

Authors: Turra, G. M., Merotto, A., MacGregor, D. R.

Date: 2025-08-25 · Version: 1
DOI: 10.1101/2025.08.21.671469

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study evaluated barley stripe mosaic virus (BSMV) and foxtail mosaic virus (FoMV) vectors for virus-induced gene silencing (VIGS) and virus-mediated overexpression (VOX) in several Oryza sativa cultivars, finding that neither vector altered gene expression despite successful assays in wheat and extensive optimization. The lack of photobleaching with BSMV-PDS and absent GFP fluorescence with FoMV suggest intrinsic resistance mechanisms in rice, highlighting species-specific limitations of virus-enabled reverse genetics and the need for alternative vectors.

Virus-enabled reverse genetics VIGS VOX Barley stripe mosaic virus Oryza sativa

High Cross Pollination Frequency in Rice Landraces in Field Condition

Authors: Deb, D., Bhattacharya, D., Nauri, M.

Date: 2025-08-07 · Version: 1
DOI: 10.1101/2025.08.06.668876

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study measured flower opening time and flower exposure duration (FED) in rice cultivars and performed controlled crossing experiments under short‑day and long‑day conditions, finding that when FED overlap exceeds ~20 min, cross‑pollination frequency often exceeds 60 % and can reach 100 %. These results overturn the long‑standing view that rice cross‑pollination is <2 % and highlight the need to investigate genetic factors underlying F1 sterility.

flower opening time flower exposure duration cross pollination frequency Oryza sativa short‑day/long‑day photoperiod

Efficient accumulation of new irregular monoterpene malonyl glucosides in Nicotiana benthamiana achieved by co-expression of isoprenyl diphosphate synthases and substrate-producing enzymes

Authors: Gerasymenko, I., Sheludko, Y. V., Schmidts, V., Warzecha, H.

Date: 2025-08-07 · Version: 1
DOI: 10.1101/2025.08.06.668877

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study establishes a transient Agrobacterium-mediated expression platform in Nicotiana benthamiana to produce glycosylated irregular monoterpenes by enhancing DMAPP biosynthesis through co‑expression of DXS, IDI, and HMGR. Engineering of plastidial and cytoplasmic pathways, including a bacterial cyclolavandulyl diphosphate synthase, led to the accumulation of six novel glucoside derivatives, reaching up to 6.6 µmol g⁻¹ fresh weight, the highest reported for plant‑based production.

irregular monoterpenes Nicotiana benthamiana transient expression DMAPP metabolic engineering glycosylated monoterpene glucosides

Protocol for capturing the RNA-binding proteome from plants using orthogonal organic phase separation

Authors: Sanchez-Camargo, V. A., Kramer, G., van den Burg, H. A.

Date: 2025-07-29 · Version: 1
DOI: 10.1101/2025.07.29.667348

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The authors present a protocol for the large‑scale isolation of RNA‑binding proteins cross‑linked to RNA, involving in vivo UV‑crosslinking, tissue lysis, fractionation, and organic‑solvent purification of RNA‑protein adducts for downstream proteomics analysis. Although developed with Nicotiana benthamiana leaves, the method can be adapted to other plant species and tissues.

RNA-binding proteins UV crosslinking RNA‑protein adducts Proteomics Nicotiana benthamiana

Multipartite coevolution shapes plant apoplastic immunity against rice blast fungus

Authors: Takeda, T., Shimizu, M., Kodan, A., Utsushi, H., Kanzaki, E., Natsume, S., Imai, T., Oikawa, K., Abe, A., Terauchi, R.

Date: 2025-07-06 · Version: 1
DOI: 10.1101/2025.07.03.663104

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study demonstrates that a beta‑1,3‑glucan‑binding protein from the rice blast fungus Magnaporthe oryzae interacts with the rice thaumatin‑like protein OsPR5, which sequesters the fungal protein to trigger immunity, while the fungus secretes thaumatin‑binding proteins to counteract this defense. Additionally, a rice cell‑surface receptor kinase containing a thaumatin domain has evolved to detect the fungal GBP, highlighting a complex coevolutionary arms race in the rice apoplast.

beta‑1,3‑glucan‑binding protein Magnaporthe oryzae Oryza sativa thaumatin‑like proteins co‑evolutionary immunity

Mutualist-pathogen co-colonisation modulates phosphoinositide signatures at host intracellular interfaces

Authors: Guyon, A., Staps, T., Badot, L., Schornack, S.

Date: 2025-06-24 · Version: 1
DOI: 10.1101/2025.06.23.661106

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study used Nicotiana benthamiana lines expressing fluorescent biosensors for PI4P and PI(4,5)P2 to visualize root colonisation by the pathogen Phytophthora palmivora and the mutualist fungus Funneliformis mosseae. Distinct phosphoinositide patterns distinguished the two interactions, and co‑colonisation induced recruitment of PI4P to pathogen haustoria, correlating with increased resistance, indicating dynamic remodeling of host membrane identity.

phosphoinositide signaling PI4P PI(4,5)P2 co-colonisation Nicotiana benthamiana
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