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AI-summarized plant biology research papers from bioRxiv

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Latest 47 Papers

WITHDRAWN: The NLR immune receptor Roq1 recognizes the Pseudomonas syringae HopAG1 effector via its Nudix domain

Authors: Gorecka, M., Jonak, M., Grech-Baran, M., Steczkiewicz, K., Ochoa, J. C., Krepski, T., Zembek, P. B., Pawłowski, K., Krzymowska, M.

Date: 2026-01-19 · Version: 2
DOI: 10.1101/2025.06.13.659573

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study demonstrates that the Nicotiana benthamiana NLR Roq1, previously known to recognize the XopQ/HopQ1/RipB effector family, also detects the structurally distinct HopAG1 effector, leading to reduced bacterial growth and disease symptoms. Roq1-HopAG1 interaction was confirmed by co‑immunoprecipitation and attributed to the Nudix domain of HopAG1 binding a similar receptor interface as XopQ, suggesting broader effector recognition potential for Roq1 and other TNLs.

NLR Roq1 HopAG1 Nudix domain Nicotiana benthamiana

Overexpression of PtaHDG11 enhances drought tolerance and suppresses trichome formation in Populus tremula x Populus alba

Authors: Fendel, A., Fladung, M., Bruegmann, T.

Date: 2026-01-13 · Version: 1
DOI: 10.64898/2026.01.12.699028

Category: Plant Biology

Model Organism: Populus tremula × Populus alba

AI Summary

The study identified the poplar homolog of Arabidopsis HDG11 and generated transgenic poplar hybrids overexpressing PtaHDG11. Constitutive expression conferred markedly improved drought tolerance, as evidenced by higher leaf water content, reduced oxidative damage, up‑regulation of antioxidant genes, and greater post‑stress biomass, while also causing a glabrous phenotype. These results highlight PtaHDG11 as a promising target for breeding drought‑resilient trees.

HDG11 drought tolerance Populus hybrid antioxidant genes transgenic overexpression

NT-C2-Dependent Phosphoinositide Binding Controls PLASTID MOVEMENT IMPAIRED1 Localization and Function

Authors: Cieslak, D., Staszalek, Z., Hermanowicz, P., Łabuz, J. M., Dobrowolska, G., Sztatelman, O.

Date: 2025-12-31 · Version: 1
DOI: 10.64898/2025.12.30.697064

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identifies the extended NT‑C2 domain of Plastid Movement Impaired 1 (PMI1) as the main membrane‑binding module that interacts with PI4P and PI(4,5)P2, requiring basic residues for plasma‑membrane association. Calcium binding by the NT‑C2 domain modulates its phosphoinositide preference, and cytosolic Ca2+ depletion blocks blue‑light‑induced PMI1 redistribution, indicating that both the NT‑C2 domain and adjacent intrinsically disordered regions are essential for PMI1’s role in chloroplast movement.

chloroplast movement PMI1 NT-C2 domain phosphoinositide binding calcium signaling

The CCCH Zinc Finger Gene PgCCCH50 from Pearl Millet Confers Drought and Salt Tolerance through an ABA-Dependent PgAREB1-PgCCCH50 Module

Authors: xie, z., zhu, J., Yu, G., Ma, X., Zhou, Y., Yan, H., Huang, L.

Date: 2025-12-25 · Version: 1
DOI: 10.64898/2025.12.23.696222

Category: Plant Biology

Model Organism: Pennisetum glaucum

AI Summary

The authors performed a genome-wide analysis of 53 CCCH zinc‑finger genes in pearl millet, identified seven stress‑responsive members and demonstrated that overexpressing PgC3H50 in Arabidopsis enhances drought and salt tolerance. They showed that the ABA‑responsive transcription factor PgAREB1 directly binds the PgC3H50 promoter, activating its expression, as confirmed by yeast one‑hybrid, dual‑luciferase and EMSA assays, defining a new PgAREB1‑PgC3H50 regulatory module.

CCCH zinc finger proteins drought tolerance salinity stress ABA signaling Pearl millet

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1
DOI: 10.64898/2025.12.13.694100

Category: Plant Biology

Model Organism: General

AI Summary

The authors used a bottom‑up thermodynamic modelling framework to investigate how plants decode calcium signals, starting from Ca2+ binding to EF‑hand proteins and extending to higher‑order decoding modules. They identified six universal Ca2+-decoding modules that can explain variations in calcium sensitivity among kinases and provide a theoretical basis for interpreting calcium signal amplitude and frequency in plant cells.

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

Genetic Insights from Line x Tester Analysis of Maize Lethal Necrosis Testcrosses for Developing Multi-Stress-Resilient Hybrids in Sub-Saharan Africa

Authors: Gowda, M., Beyene, Y., L.M., S., Ogugo, V., Amadu, M. K., Chaikam, V.

Date: 2025-12-09 · Version: 1
DOI: 10.64898/2025.12.07.692857

Category: Plant Biology

Model Organism: Zea mays

AI Summary

A comprehensive multi‑environment trial of 437 maize testcross hybrids derived from 38 MLN‑tolerant lines and 29 testers identified additive genetic effects as the primary driver of grain yield, disease resistance, and drought tolerance. Strong general combining ability and specific combining ability patterns were uncovered, with top hybrids delivering up to 5.75 t ha⁻¹ under MLN pressure while maintaining high performance under optimum and drought conditions. The study provides a framework for selecting elite parents and exploiting both additive and non‑additive effects to develop resilient maize hybrids for sub‑Saharan Africa.

maize lethal necrosis (MLN) drought tolerance grain yield combining ability GGE biplot

Trichome formation in Nicotiana benthamiana is induced by Agrobacterium

Authors: Chen, J., Hands, P., Patel, M., Yang, L., Zhang, C., Smith, N., Luo, M., Ayliffe, M.

Date: 2025-12-05 · Version: 1
DOI: 10.64898/2025.12.02.691950

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study demonstrates that infiltrating Nicotiana benthamiana leaves with specific nopaline-type Agrobacterium tumefaciens strains dramatically increases local glandular trichome density within 15 days, an effect linked to the bacterial trans-zeatin synthase (tzs) gene that produces the cytokine trans‑zeatin. This simple Agrobacterium‑mediated approach enables direct comparison of high‑density trichome regions with adjacent isogenic tissue on the same leaf.

trichome density Agrobacterium infiltration trans‑zeatin synthase (tzs) cytokinin trans‑zeatin Nicotiana benthamiana

Ca2+-driven nanodomain enrichment and plasma membrane proteome remodelling enable bacterial outer membrane vesicle perception in rice

Authors: Mondal, I., Das, H., Behera, S.

Date: 2025-12-02 · Version: 2
DOI: 10.1101/2025.09.17.676730

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study reveals that rice perceives Xanthomonas oryzae pv. oryzae outer membrane vesicles through a rapid calcium signal that triggers plasma‑membrane nanodomain formation and the re‑organisation of defence‑related proteins, establishing an early immune response. Without this Ca2+ signal, OMVs are not recognized and immunity is weakened.

Xanthomonas oryzae pv. oryzae outer membrane vesicles calcium signaling plasma membrane nanodomains proteomics

Cytokinin-mediated trichome initiation in Nicotiana benthamiana upon Agrobacterium tumefaciens infiltration

Authors: Saebel, R., Brand, A., Balcke, G. U., Syrowatka, F., Horn, C., Marillonnet, S., Tissier, A. F.

Date: 2025-11-26 · Version: 1
DOI: 10.1101/2025.11.23.690080

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

Infiltration of Nicotiana benthamiana leaves with Agrobacterium tumefaciens strain GV3101 carrying the pMP90 Ti plasmid triggers de novo formation of capitate glandular trichomes and elevates acyl‑sugar production, an effect absent with other strains. The responsible factor is the trans‑zeatin synthase (tzs) gene on pMP90, and exogenous application of cytokinins (trans‑zeatin or benzylaminopurine) alone can reproduce trichome induction, linking cytokinin signaling to trichome development. The study highlights that Agrobacterium-mediated transient assays can have unintended developmental and biochemical impacts, recommending strain testing to mitigate such effects.

Agrobacterium tumefaciens Nicotiana benthamiana glandular trichomes cytokinins trans‑zeatin synthase

Causes and consequences of experimental variation in Nicotiana benthamiana transient expression

Authors: Tang, S. N., Szarzanowicz, M., Lanctot, A., Sirirungruang, S., Kirkpatrick, L. D., Drako, K., Alamos, S., Cheng, L., Waldburger, L. M., Liu, S., Huang, L., Akyuz Turumtay, E., Kazaz, S., Baidoo, E., Eudes, A., Thompson, M., Shih, P.

Date: 2025-11-20 · Version: 2
DOI: 10.1101/2025.06.12.659391

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study systematically examines sources of variability in Agrobacterium tumefaciens-mediated transient expression in Nicotiana benthamiana, analyzing a large dataset of 1,915 plants collected over three years. It demonstrates that normalization methods must be validated for each experimental context and provides a statistical model and power analysis framework to determine appropriate sample sizes for detecting specific effect sizes, offering practical guidelines to improve reproducibility in quantitative plant and synthetic biology studies.

Agrobacterium infiltration Nicotiana benthamiana transient expression variability normalization strategies power analysis
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