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AI-summarized plant biology research papers from bioRxiv

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Latest 27 Papers

Polyphenol oxidase mutant Nicotiana benthamiana plants increase yield and purity of recombinant proteins and enable studies of proteins in their native state.

Authors: Zheng, K., van der Hoorn, R. A. L.

Date: 2025-09-30 · Version: 1
DOI: 10.1101/2025.09.28.679031

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The authors created two Nicotiana benthamiana lines with CRISPR-mediated knockouts of two polyphenol oxidase genes, which exhibited slightly accelerated growth and retained normal transient GFP expression. These ppo-deficient plants produced leaf extracts that remained greener with markedly reduced enzymatic browning and protein crosslinking, leading to a nearly fourfold increase in yield and improved purity of a transiently expressed His‑tagged tomato protease. The study demonstrates that PPO depletion can enhance recombinant protein recovery from plant tissue.

Nicotiana benthamiana polyphenol oxidase knockout agroinfiltration recombinant protein purification enzymatic browning

Calcium-dependent protein kinases participate in RBOH-mediated sustained ROS burst during plant immune cell death

Authors: Hino, Y., Yoshioka, M., Adachi, H., Yoshioka, H.

Date: 2025-09-01 · Version: 1
DOI: 10.1101/2025.09.01.672762

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study demonstrates that calcium-dependent protein kinases NbCDPK4 and NbCDPK5 directly phosphorylate the NADPH oxidase NbRBOHB at Ser‑123, enhancing sustained ROS production during effector-triggered immunity in Nicotiana benthamiana. Constitutively active CDPKs also upregulate NbRBOHB transcription, and phosphorylation of Ser‑123 is amplified by Ca2+ influx triggered by an autoactive helper NLR (NRC4). These results define a NbCDPK‑NbRBOHB signaling module that links NLR activation to prolonged ROS bursts in ETI.

effector-triggered immunity calcium-dependent protein kinases NADPH oxidase reactive oxygen species Nicotiana benthamiana

Jasmonate Primes Plant Responses to Extracellular ATP through Purinoceptor P2K1

Authors: Jewell, J. B., Carlton, A., Tolley, J. P., Bartley, L. E., Tanaka, K.

Date: 2025-08-12 · Version: 2
DOI: 10.1101/2024.11.07.622526

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that jasmonate (JA) enhances Arabidopsis thaliana responses to extracellular ATP (eATP) by upregulating the eATP receptor P2K1 and amplifying eATP‑induced cytosolic Ca²⁺ spikes and transcriptional reprogramming in a COI1‑dependent manner, whereas salicylic acid pretreatment suppresses these responses. These findings reveal a JA‑mediated priming mechanism that potentiates eATP signaling during stress.

extracellular ATP jasmonate signaling P2K1 receptor COI1 calcium signaling

Efficient accumulation of new irregular monoterpene malonyl glucosides in Nicotiana benthamiana achieved by co-expression of isoprenyl diphosphate synthases and substrate-producing enzymes

Authors: Gerasymenko, I., Sheludko, Y. V., Schmidts, V., Warzecha, H.

Date: 2025-08-07 · Version: 1
DOI: 10.1101/2025.08.06.668877

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study establishes a transient Agrobacterium-mediated expression platform in Nicotiana benthamiana to produce glycosylated irregular monoterpenes by enhancing DMAPP biosynthesis through co‑expression of DXS, IDI, and HMGR. Engineering of plastidial and cytoplasmic pathways, including a bacterial cyclolavandulyl diphosphate synthase, led to the accumulation of six novel glucoside derivatives, reaching up to 6.6 µmol g⁻¹ fresh weight, the highest reported for plant‑based production.

irregular monoterpenes Nicotiana benthamiana transient expression DMAPP metabolic engineering glycosylated monoterpene glucosides

The Rapid Mechanically Activated (RMA) channel transduces increases in plasma membrane tension into transient calcium influx

Authors: Guerringue, Y., Thomine, S., Allain, J.-M., Frachisse, J.-M.

Date: 2025-08-07 · Version: 1
DOI: 10.1101/2025.08.06.668926

Category: Plant Biology

Model Organism: General

AI Summary

The study characterizes a plasma membrane-localized, calcium‑permeable force‑gated channel named Rapid Mechanically Activated (RMA) in plants, using patch‑clamp and pressure‑clamp to elucidate its rapid activation, inactivation, and irreversible adaptation upon repeated mechanical stimulation. Kinetic modeling shows the channel functions as a pass‑band filter for frequencies between 10 Hz and 1 kHz, supporting its role in transducing high‑frequency mechano‑stimuli such as insect vibrations.

mechanically activated calcium channel RMA channel calcium signaling high‑frequency mechanical stimulation kinetic modeling

Protocol for capturing the RNA-binding proteome from plants using orthogonal organic phase separation

Authors: Sanchez-Camargo, V. A., Kramer, G., van den Burg, H. A.

Date: 2025-07-29 · Version: 1
DOI: 10.1101/2025.07.29.667348

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The authors present a protocol for the large‑scale isolation of RNA‑binding proteins cross‑linked to RNA, involving in vivo UV‑crosslinking, tissue lysis, fractionation, and organic‑solvent purification of RNA‑protein adducts for downstream proteomics analysis. Although developed with Nicotiana benthamiana leaves, the method can be adapted to other plant species and tissues.

RNA-binding proteins UV crosslinking RNA‑protein adducts Proteomics Nicotiana benthamiana

Single-cell-resolved calcium and organelle dynamics in resistosome-mediated cell death

Authors: Chen, Y.-F., Lin, K.-Y., Huang, C.-Y., Hou, L.-Y., Yuen, E. L. H., Sun, W.-C. J., Chiang, B.-J., Chang, C.-W., Wang, H.-Y., Bozkurt, T. O., Wu, C.-H.

Date: 2025-07-01 · Version: 1
DOI: 10.1101/2025.06.27.662017

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study visualizes subcellular dynamics following activation of the NRC4 resistosome, showing that NRC4 enrichment at the plasma membrane triggers calcium influx, followed by sequential disruption of mitochondria, plastids, endoplasmic reticulum, and cytoskeleton, culminating in plasma membrane rupture and cell death. These observations define a temporally ordered cascade of organelle and membrane events that execute plant immune cell death.

NLR resistosome calcium signaling organelle disruption cell death cascade plant immunity

The CATION CALCIUM EXCHANGER 4 (CCX4) regulates LRX1-related root hair development through Ca2+ homeostasis

Authors: Hou, X., Tortora, G., Herger, A., Buratti, S., Dobrev, P. I., Vaculikov, R., Lacek, J., Sotiropoulos, A. G., Kadler, G., Schaufelberger, M., Candeo, A., Bassi, A., Wicker, T., Costa, A., Ringli, C.

Date: 2025-06-27 · Version: 1
DOI: 10.1101/2025.06.25.660713

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identified a suppressor mutation (sune42) in the Golgi-localized Ca2+ transporter CCX4 that alleviates the dominant‑negative root hair phenotype caused by the extensin‑less LRX1ΔE14 protein in Arabidopsis. Detailed Ca2+ imaging showed that LRX1ΔE14 disrupts tip‑focused cytoplasmic Ca2+ oscillations, a defect rescued by the sune42 mutation, highlighting the role of Golgi‑mediated Ca2+ homeostasis in root hair growth.

calcium signaling root hair development LRX1 extensin domain CCX4 Golgi transporter Ca2+ homeostasis

Mutualist-pathogen co-colonisation modulates phosphoinositide signatures at host intracellular interfaces

Authors: Guyon, A., Staps, T., Badot, L., Schornack, S.

Date: 2025-06-24 · Version: 1
DOI: 10.1101/2025.06.23.661106

Category: Plant Biology

Model Organism: Nicotiana benthamiana

AI Summary

The study used Nicotiana benthamiana lines expressing fluorescent biosensors for PI4P and PI(4,5)P2 to visualize root colonisation by the pathogen Phytophthora palmivora and the mutualist fungus Funneliformis mosseae. Distinct phosphoinositide patterns distinguished the two interactions, and co‑colonisation induced recruitment of PI4P to pathogen haustoria, correlating with increased resistance, indicating dynamic remodeling of host membrane identity.

phosphoinositide signaling PI4P PI(4,5)P2 co-colonisation Nicotiana benthamiana

Thermotolerance in Chia (Salvia hispanica L.) is Mediated by Rapid Heat-Induced Transcriptomic Reprogramming and Lipid Remodelling in Leaves

Authors: Zare, T., Kehelpannala, C., Bhatnagar, A., Rupasinghe, T., Ebert, B., Fournier-Level, A., Roessner, U.

Date: 2025-06-02 · Version: 1
DOI: 10.1101/2025.05.30.656991

Category: Plant Biology

Model Organism: Salvia hispanica

AI Summary

The study used transcriptomic and lipidomic profiling to investigate how chia (Salvia hispanica) leaves respond to short‑term (3 h) and prolonged (27 h) heat stress at 38 °C, revealing rapid activation of calcium‑signaling and heat‑shock pathways and reversible changes in triacylglycerol levels. Nearly all heat‑responsive genes returned to baseline expression after 24 h recovery, highlighting robust thermotolerance mechanisms that could inform improvement of other oilseed crops.

heat stress Salvia hispanica transcriptomics lipidomics calcium signaling
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