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AI-summarized plant biology research papers from bioRxiv

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Latest 39 Papers

Molecular basis of delayed leaf senescence induced by short-term treatment with low phosphate in rice

Authors: Martin-Cardoso, H., Bundo, M., Garcia-Molina, A., San Segundo, B.

Date: 2026-01-24 · Version: 1
DOI: 10.64898/2026.01.23.701354

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study demonstrates that short‑term low phosphate treatment delays leaf senescence in rice by increasing photosynthetic pigments, enhancing antioxidant enzyme activities, and reducing oxidative damage, whereas high phosphate accelerates senescence. CRISPR/Cas9 editing of MIR827 to lower Pi levels also postpones senescence, while overexpression of MIR827 or MIR399, which raises Pi, speeds it up. Transcriptomic profiling reveals coordinated changes in senescence‑associated and metabolic pathways underlying the low‑phosphate response.

phosphate deficiency leaf senescence Oryza sativa CRISPR/Cas9 transcriptomic analysis

Phosphite, an analog of phosphate, counteracts Phosphate Induced Susceptibility of rice to the blast fungus Magnaporthe oryzae

Authors: Mallavarapu, M. D., Martin-Cardoso, H., Bücker, G., Alussi, M., Garcia-Molina, A., San Segundo, B.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.700763

Category: Plant Biology

Model Organism: Multi-species

AI Summary

Phosphite (Phi) and phosphate (Pi) share the same root uptake system, but Phi acts as a biostimulant that modulates plant growth and disease resistance in a species‑ and Pi‑dependent manner. In Arabidopsis, Phi induces hypersensitive‑like cell death and enhances resistance to Plectosphaerella cucumerina, while in rice it counteracts Pi‑induced susceptibility to Magnaporthe oryzae and Fusarium fujikuroi, accompanied by extensive transcriptional reprogramming.

phosphite (Phi) phosphate (Pi) plant immunity pathogen resistance transcriptomic reprogramming

Effects of atmospheric CO2 levels on the susceptibility of maize to diverse pathogens

Authors: Khwanbua, E., Qi, Y., Ssengo, J., Liu, P., Graham, M. A., Whitham, S.

Date: 2026-01-02 · Version: 1
DOI: 10.64898/2025.12.31.697224

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study examined how elevated atmospheric CO₂ (550 ppm) affects immunity in the C₄ cereal maize (Zea mays L.) by exposing plants grown under ambient and elevated CO₂ to a range of pathogens. Elevated CO₂ increased susceptibility to sugarcane mosaic virus, decreased susceptibility to several bacterial and fungal pathogens, and left susceptibility to others unchanged, with reduced bacterial disease linked to heightened basal immune responses. These findings provide a baseline for future investigations into CO₂‑responsive defense mechanisms in C₄ crops.

elevated CO₂ maize plant immunity pathogen susceptibility C4 crops

Do stomatal movements have a limited dynamic range?

Authors: Muraya, F., Siqueira, J. A., Very, A.-A., Roelfsema, R.

Date: 2025-12-26 · Version: 1
DOI: 10.64898/2025.12.22.695892

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study examined the roles of AtKUP2, AtKUP6, AtKUP8, and GORK potassium transport proteins in guard cell function by performing gas-exchange measurements on mature Arabidopsis leaves. Loss of KUP2/6/8 reduced stomatal conductance, whereas a GORK loss‑of‑function mutant showed increased conductance, yet the magnitude of light‑ and ABA‑induced transpiration changes remained similar across genotypes, suggesting a limited dynamic range for rapid stomatal movements that relies on small ionic osmolytes.

stomatal conductance potassium transporters GORK channel AtKUP2/6/8 Arabidopsis

Comparative Evaluation of Conventional Inorganic Fertilization and Sesbania rostrata Green Manuring on Soil Properties and the Growth and Development of Oryza sativa L. Pant Basmati 1

Authors: Joshi, H. C., Patni, B., Guru, S. K., Bhatt, M. K., Singh, M.

Date: 2025-12-26 · Version: 1
DOI: 10.64898/2025.12.24.696455

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

A two‑year field trial compared conventional and organic nutrient management on the Basmati rice cultivar Pant Basmati 1, revealing that conventional fertilizer enhanced later‑stage growth and grain yield, while organic inputs increased early plant height and markedly improved soil health and harvest index in the second year. Despite some yield differences, organic management achieved comparable productivity with superior soil macro‑ and micronutrient status, water‑holding capacity, aggregate stability, and enzyme activities, supporting its sustainability as an alternative nutrient regime.

Oryza sativa organic nutrient management soil health harvest index Basmati rice

In vivo binding by Arabidopsis SPLICING FACTOR 1 shifts 3' splice site choice, regulating circadian rhythms and immunity in plants

Authors: Agrofoglio, Y. C., Iglesias, M. J., de Leone, M. J., Hernando, C. E., Lewinski, M., Torres, S. B., Contino, G., Yanovsky, M. J., Staiger, D., Mateos, J. L.

Date: 2025-12-17 · Version: 1
DOI: 10.64898/2025.12.17.693997

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study characterizes the plant spliceosomal protein AtSF1 in Arabidopsis thaliana, using iCLIP and RNA‑seq to map its in vivo branch point binding sites and demonstrate that loss of AtSF1 causes widespread 3' splice‑site mis‑selection. Structural comparison reveals a plant‑specific domain architecture, and the identified AtSF1 targets are enriched for circadian and defense genes, linking splicing regulation to timing and immunity.

alternative splicing branch point recognition AtSF1 circadian clock regulation plant immunity

The Pik NLR pair accumulates at the plasma membrane as a hetero-oligomeric sensor-helper immune protein complex prior to activation

Authors: Pai, H., Contreras, M. P., Salguero Linares, J., Luedke, D., Posbeyikian, A., Kourelis, J., Kamoun, S., Marchal, C.

Date: 2025-12-02 · Version: 1
DOI: 10.64898/2025.11.30.691369

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study examined the pre‑activation state of the rice NLR pair Pik‑1 (sensor) and Pik‑2 (helper) when transiently expressed in Nicotiana benthamiana leaves. Both wild‑type and engineered Pik‑1 variants constitutively associate with Pik‑2 to form ~1 MDa hetero‑oligomeric complexes that localize to the plasma membrane in the absence of effector. These results reveal that some NLRs exist as pre‑assembled membrane‑associated complexes prior to pathogen perception.

NLR oligomerization Pik-1/Pik-2 sensor‑helper pair resting state complex plasma membrane localization Oryza sativa

KDM7-mediated oxygen sensing reprograms chromatin to enhance hypoxia tolerance in the root

Authors: Zhang, D., Chirinos, X., Del Chiaro, A., Shukla, V., Ryder, A., Beltran, A. D. P., Iacopino, S., Bota, P., Zivkovic, D., Fioriti, F., Telara, Y., Ellison, C. J., Costa, F., Elliott, P. R., Giorgi, F., Giuntoli, B., Flashman, E. G., Abreu, I., Licausi, F.

Date: 2025-11-26 · Version: 1
DOI: 10.1101/2025.11.24.690241

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study shows that Arabidopsis root tips adapt to hypoxia by increasing H3K4me3 levels, linked to the inhibition of group 7 demethylases (KDM7s). Genetic loss of KDM7s mimics hypoxic conditions, activating genes that sustain meristem survival, suggesting KDM7s act as root‑specific oxygen sensors that prime epigenetic tolerance mechanisms.

hypoxia root meristem H3K4 trimethylation KDM7 demethylase Arabidopsis

Systematic Analysis of the EXO70 Gene Family in Kiwifruit Species: Evolutionary Selection and Potential Functions in Plant Immunity

Authors: Cui, W., DENG, C. H., Yoon, M. H., Zarsky, V., Rikkerink, E. H. A.

Date: 2025-10-28 · Version: 1
DOI: 10.1101/2025.10.28.684437

Category: Plant Biology

Model Organism: Actinidia spp.

AI Summary

A genome-wide survey identified 217 EXO70 genes across five kiwifruit (Actinidia spp.) species, classifying them into three subfamilies and nine clades and revealing lineage‑specific expansions, especially in EXO70C, EXO70E, and EXO70H. Functional assays demonstrated that kiwifruit EXO70B1 interacts with the immune hub protein RIN4_1, suggesting a conserved EXO70‑RIN4 module in plant immunity. The study provides a foundational resource for exploring EXO70‑mediated disease resistance in kiwifruit.

EXO70 gene family Actinidia vesicle trafficking plant immunity RIN4 interaction

Additive and partially dominant effects from genomic variation contribute to rice heterosis

Authors: Dan, Z., Chen, Y., Zhou, W., Xu, Y., Huang, J., Chen, Y., Meng, J., Yao, G., Huang, W.

Date: 2025-10-17 · Version: 4
DOI: 10.1101/2024.07.16.603817

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study systematically identified heterosis-associated genes and metabolites in rice, functionally validated three genes influencing seedling length, and integrated these molecules into network modules to explain heterosis variance. Predominant additive and partially dominant inheritance patterns were linked to parental genomic variants and were shown to affect 17 agronomic traits in rice, as well as yield heterosis in maize and biomass heterosis in Arabidopsis. The work highlights the quantitative contribution of transcriptomic and metabolomic variation, especially in phenylpropanoid biosynthesis, to hybrid vigor.

heterosis Oryza sativa additive and partially dominant effects metabolomics phenylpropanoid biosynthesis
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