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AI-summarized plant biology research papers from bioRxiv

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Latest 94 Papers

Alternative splicing of PIF4 regulates plant development under heat stress

Authors: Gonzalez, M. N., Alary, B., Szakonyi, D., Laloum, T., Duque, P., Martin, G.

Date: 2025-12-18 · Version: 1
DOI: 10.64898/2025.12.17.694898

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identified a heat‑responsive exon‑skipping event in the basic Helix‑Loop‑Helix domain of the transcription factor PIF4, which reduces PIF4 activity and promotes photomorphogenic traits in etiolated seedlings. This reveals a novel post‑transcriptional mechanism by which plants modulate PIF4 function during heat stress.

PIF4 alternative splicing heat stress photomorphogenesis post‑transcriptional regulation

QTL for Heat-Induced Stomatal Anatomy Underpin Gas Exchange Variation in Field-Grown Wheat

Authors: Chaplin, E. D., Tanaka, E., Merchant, A., Sznajder, B., Trethowan, R., Salter, W. T.

Date: 2025-12-17 · Version: 1
DOI: 10.64898/2025.12.16.694723

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study evaluated how stomatal anatomy and physiological efficiency influence wheat heat tolerance across multi‑environment field trials with 200 genotypes, using early versus delayed sowing to impose temperature stress. Findings revealed a decoupling between anatomical capacity (gsmax) and actual conductance (gs, gse) under heat, plastic shifts toward smaller, denser stomata, and identified 125 QTL linked to stomatal traits, suggesting targets for breeding climate‑resilient wheat.

stomatal conductance heat stress wheat (Triticum aestivum) QTL mapping stomatal anatomy

FLOWERING LOCUS T genes MtFTb1 and MtFTb2 act redundantly to promote flowering under long days in Medicago truncatula

Authors: Perez Santangelo, S., Macknight, R. C.

Date: 2025-12-17 · Version: 1
DOI: 10.64898/2025.12.15.694442

Category: Plant Biology

Model Organism: Medicago truncatula

AI Summary

The study identifies MtFTb1 and MtFTb2 as essential, redundant regulators of long‑day flowering in the legume Medicago truncatula, demonstrating that they are required for up‑regulating MtFTa1 under vernalised long‑day conditions. Using CRISPR/Cas9‑generated single and double mutants, the authors show that double mutants are specifically delayed in flowering under long days while retaining vernalization responsiveness, and transcriptomic analyses reveal that MtFTb1/2 activate MADS‑box genes and other flowering regulators.

flowering time FT genes Medicago truncatula CRISPR/Cas9 long‑day photoperiod

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1
DOI: 10.64898/2025.12.13.694100

Category: Plant Biology

Model Organism: General

AI Summary

The authors used a bottom‑up thermodynamic modelling framework to investigate how plants decode calcium signals, starting from Ca2+ binding to EF‑hand proteins and extending to higher‑order decoding modules. They identified six universal Ca2+-decoding modules that can explain variations in calcium sensitivity among kinases and provide a theoretical basis for interpreting calcium signal amplitude and frequency in plant cells.

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

A Critical Window of Maternal Temperature Effects on Weedy Rice Seed Dormancy

Authors: Auge, G., Nishikata, R., Imaizumi, T.

Date: 2025-12-15 · Version: 1
DOI: 10.64898/2025.12.12.693925

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study identified a critical two‑week window of elevated maternal temperature during weeks 4–5 after flowering that delays dormancy release in weedy rice seeds. Controlled‑environment and field transplant experiments showed that this late‑reproductive‑stage heat exposure postpones germination after after‑ripening, providing insight for predicting seed behavior and improving weed management strategies.

seed dormancy maternal temperature weedy rice heat stress reproductive stage sensitivity

High-frequency sorghum transformation toolkit enhances Cas9 efficiency and expands promoter-editing capability with SpRY

Authors: Shen, J., Aregawi, K., Anwar, S., Miller, T., Groover, E. D., Rajkumar, M., Savage, D. F., Lemaux, P. G.

Date: 2025-12-07 · Version: 2
DOI: 10.1101/2025.01.21.634149

Category: Plant Biology

Model Organism: Sorghum bicolor

AI Summary

The study presents an optimized Agrobacterium-mediated transformation toolkit for Sorghum bicolor that achieves up to 95.7% editing efficiency using CRISPR/Cas9 targeting the SbPDS gene, and demonstrates comparable performance with a PAM‑broadened SpRY variant. This platform enables multiplex genome editing and is positioned for integration of advanced tools such as prime and base editors to accelerate sorghum breeding.

Sorghum bicolor CRISPR/Cas9 Agrobacterium-mediated transformation SpRY (PAM‑flexible Cas9) high-efficiency genome editing

Vacuolar invertase knockout enhances drought tolerance in potato plants

Authors: Roitman, M., Teper-Bamnolker, P., Doron-Faigenboim, A., Sikron, N., Fait, A., Vrobel, O., Tarkowski, P., Moshelion, M., Bocobza, S., Eshel, D.

Date: 2025-12-02 · Version: 1
DOI: 10.64898/2025.12.01.691554

Category: Plant Biology

Model Organism: Solanum tuberosum

AI Summary

CRISPR/Cas9 knockout of the vacuolar invertase gene (StVInv) in potato enhanced drought resilience, with mutants maintaining higher stomatal conductance, transpiration, and photosynthetic efficiency, leading to improved agronomic water-use efficiency and biomass under water limitation. Metabolomic profiling showed accumulation of galactinol and raffinose, while ABA levels were reduced, indicating altered osmoprotective and hormonal responses that support sustained growth during drought.

drought stress vacuo lar invertase knockout CRISPR/Cas9 raffinose family oligosaccharides water-use efficiency

The Pik NLR pair accumulates at the plasma membrane as a hetero-oligomeric sensor-helper immune protein complex prior to activation

Authors: Pai, H., Contreras, M. P., Salguero Linares, J., Luedke, D., Posbeyikian, A., Kourelis, J., Kamoun, S., Marchal, C.

Date: 2025-12-02 · Version: 1
DOI: 10.64898/2025.11.30.691369

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study examined the pre‑activation state of the rice NLR pair Pik‑1 (sensor) and Pik‑2 (helper) when transiently expressed in Nicotiana benthamiana leaves. Both wild‑type and engineered Pik‑1 variants constitutively associate with Pik‑2 to form ~1 MDa hetero‑oligomeric complexes that localize to the plasma membrane in the absence of effector. These results reveal that some NLRs exist as pre‑assembled membrane‑associated complexes prior to pathogen perception.

NLR oligomerization Pik-1/Pik-2 sensor‑helper pair resting state complex plasma membrane localization Oryza sativa

Ca2+-driven nanodomain enrichment and plasma membrane proteome remodelling enable bacterial outer membrane vesicle perception in rice

Authors: Mondal, I., Das, H., Behera, S.

Date: 2025-12-02 · Version: 2
DOI: 10.1101/2025.09.17.676730

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study reveals that rice perceives Xanthomonas oryzae pv. oryzae outer membrane vesicles through a rapid calcium signal that triggers plasma‑membrane nanodomain formation and the re‑organisation of defence‑related proteins, establishing an early immune response. Without this Ca2+ signal, OMVs are not recognized and immunity is weakened.

Xanthomonas oryzae pv. oryzae outer membrane vesicles calcium signaling plasma membrane nanodomains proteomics

Ethylene signal-driven plant-multitrophic synergy boosts crop performance

Authors: Baer, M., Zhong, Y., Yu, B., Tian, T., He, X., Gu, L., Huang, X., Gallina, E., Metzen, I. E., Bucher, M., Song, R., Gutjahr, C., SU, Z., Moya, Y., von Wiren, N., Zhang, L., Yuan, L., Shi, Y., Wang, S., Qi, W., Baer, M., Zhao, Z., Li, C., Li, X., Hochholdinger, F., Yu, P.

Date: 2025-11-29 · Version: 1
DOI: 10.1101/2025.11.28.690471

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study uncovers how arbuscular mycorrhizal (AM) fungi induce lateral root formation in maize by activating ethylene‑responsive transcription factors (ERFs) that regulate pericycle cell division and reshape flavonoid metabolism, lowering inhibitory flavonols. It also shows that the rhizobacterium Massilia collaborates with AM fungi, degrading flavonoids and supplying auxin, thereby creating an integrated ethylene‑flavonoid‑microbe signaling network that can be harnessed to improve nutrient uptake and crop sustainability.

arbuscular mycorrhizal fungi lateral root development ethylene‑responsive transcription factors flavonoid metabolism Zea mays
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