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Latest 49 Papers

Vacuolar invertase knockout enhances drought tolerance in potato plants

Authors: Roitman, M., Teper-Bamnolker, P., Doron-Faigenboim, A., Sikron, N., Fait, A., Vrobel, O., Tarkowski, P., Moshelion, M., Bocobza, S., Eshel, D.

Date: 2025-12-02 · Version: 1
DOI: 10.64898/2025.12.01.691554

Category: Plant Biology

Model Organism: Solanum tuberosum

AI Summary

CRISPR/Cas9 knockout of the vacuolar invertase gene (StVInv) in potato enhanced drought resilience, with mutants maintaining higher stomatal conductance, transpiration, and photosynthetic efficiency, leading to improved agronomic water-use efficiency and biomass under water limitation. Metabolomic profiling showed accumulation of galactinol and raffinose, while ABA levels were reduced, indicating altered osmoprotective and hormonal responses that support sustained growth during drought.

drought stress vacuo lar invertase knockout CRISPR/Cas9 raffinose family oligosaccharides water-use efficiency

Transcriptome and hormone regulations shape drought stress-dependent Fusarium Head Blight susceptibility in different barley genotypes

Authors: Hoheneder, F., Steidele, C. E., Gigl, M., Dawid, C., Hueckelhoven, R.

Date: 2025-11-25 · Version: 1
DOI: 10.1101/2025.11.23.689882

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

Four barley genotypes were examined under simultaneous Fusarium culmorum infection and drought, revealing genotype-dependent Fusarium Head Blight severity and largely additive transcriptomic responses dominated by drought. Co‑expression and hormone profiling linked ABA and auxin to stress‑specific gene modules, and a multiple linear regression model accurately predicted combined‑stress gene expression from single‑stress data, suggesting modular regulation.

Fusarium Head Blight drought stress barley hormone profiling transcriptome analysis

The mRNA covalent modification dihydrouridine regulates transcript turnover and photosynthetic capacity during plant abiotic stress

Authors: Yu, L., Melandri, G., Dittrich, A. C., Calleja, S., Rozzi, B., Ganguly, D. R., Palos, K., Srinivasan, A., Brewer, E. K., Fischer, H., Obata, T., Elgawad, H. A., Beemster, G. T. S., Henderson, R., Garcia, C. D., Zhang, X., Stern, D., Eveland, A., Schroeder, S. J., Skirycz, A., Lyons, E., Arnold, E. A., Gregory, B. D., Nelson, A. D. L., Pauli, D.

Date: 2025-11-24 · Version: 3
DOI: 10.1101/2025.01.17.633510

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study integrates multi-omics data from six Sorghum bicolor accessions under field drought to link RNA covalent modifications (RCMs) with photosynthetic performance, identifying the enzyme SbDUS2 that produces dihydrouridine (DHU) on transcripts. Loss‑of‑function dus2 mutants in Arabidopsis thaliana reveal that DHU deficiency leads to hyperstability of photosynthesis‑related mRNAs, impairing germination, development, and stress‑induced CO2 assimilation. The authors propose DHU as a post‑transcriptional mark that promotes rapid mRNA turnover during abiotic stress, enhancing plant resilience.

RNA covalent modifications dihydrouridine (DHU) drought stress photosynthesis RNA stability

Micro-C in Solanum Uncovers Conserved Genome Folding and Epigenetically Defined Loops with Bifunctional Enhancer-Silencer Activity

Authors: Filler-Hayut, S., Hansen, A. S.

Date: 2025-10-16 · Version: 1
DOI: 10.1101/2025.10.16.682740

Category: Plant Biology

Model Organism: Solanum lycopersicum

AI Summary

The authors generated a high‑resolution 1.45‑billion‑contact Micro‑C map for cultivated tomato (Solanum lycopersicum), identifying ~4,600 long‑range chromatin loops that fall into promoter‑centered and Polycomb/heterochromatin‑associated classes. Comparative Micro‑C in wild tomatoes showed conserved loop anchors despite sequence turnover, and integration with transcriptomics revealed that promoter‑anchored loops can either activate or repress gene expression depending on the chromatin state of distal anchors.

chromatin loops Micro-C Solanum lycopersicum Polycomb repression gene regulation

Immunovisualization of spatial changes in leaves and root tissue associated with drought stress in wheat (Triticum aestivum L.)

Authors: Leszczuk, A., Kutyrieva-Nowak, N., Skrzypek, T.

Date: 2025-10-07 · Version: 1
DOI: 10.1101/2025.10.06.680837

Category: Plant Biology

Model Organism: General

AI Summary

The study employed immunofluorescence labeling and fluorescence intensity quantification to examine tissue-specific cellular modifications in plants under drought stress, revealing targeted alterations in proteoglycans, polysaccharides, and AGPs in leaves and roots. These findings highlight the importance of in planta analyses for accurately capturing stress-induced structural changes.

drought stress immunofluorescence labeling proteoglycans arabinogalactan proteins (AGP) tissue-specific adaptation

Oxidative stress-induced proteolytic activation of polyphenol oxidase triggers an oxidized flavonoids-mediated stress signaling in Camellia sinensis

Authors: Mohapatra, S., Mishra, A., Godara, R., Bali, S., Twinkle,, Kumar, A., Kumar, R., Kumar, N., Kumar, P., Acharya, V., Dogra, V.

Date: 2025-09-25 · Version: 1
DOI: 10.1101/2025.09.23.677533

Category: Plant Biology

Model Organism: Camellia sinensis

AI Summary

The study discovers that drought stress triggers proteolytic activation of chloroplast‑localized polyphenol oxidase (PPO) in Camellia sinensis, converting catechins into theaflavins that act as signaling molecules to induce an unfolded protein response and IRE1‑bZIP60‑dependent programmed cell death. Germplasm comparison, transcriptomic profiling, virus‑induced silencing, PPO overexpression, and pharmacological feeding experiments demonstrate that this PPO‑theaflavin pathway is a conserved stress sensor across species such as tomato and wheat.

polyphenol oxidase theaflavins unfolded protein response programmed cell death drought stress

Single-cell-level response to drought in Sorghum bicolor reveals novel targets for improving water use efficiency

Authors: Stata, M., Greenblum, S., Yoshinaga, Y., Koriabine, M., Keymanesh, K., Karia, P., Zhao, C., O'Malley, R. C., Rhee, S. Y.

Date: 2025-08-28 · Version: 1
DOI: 10.1101/2025.08.28.671794

Category: Plant Biology

Model Organism: Sorghum bicolor

AI Summary

The study applied single-nucleus RNA sequencing to mature Sorghum bicolor leaves under well‑watered and drought conditions, identifying major leaf cell types and their transcriptional responses. Drought induced transcriptomic changes that surpassed cell‑type differences, indicating a common response across mesophyll, bundle sheath, epidermal, vascular, and stomatal cells, and enabling the identification of candidate drought‑responsive regulators for improving water‑use efficiency.

drought stress Sorghum bicolor single-nucleus RNA sequencing cell-type specific transcription bioenergy crop

Drought drives reversible disengagement of root-mycorrhizal symbiosis

Authors: Akmakjian, G. Z., Nozue, K., Nakayama, H., Borowsky, A. T., Morris, A. M., Baker, K., Canto-Pastor, A., Paszkowski, U., Sinha, N., Brady, S., Bailey-Serres, J.

Date: 2025-08-27 · Version: 1
DOI: 10.1101/2025.08.25.671999

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study shows that during drought, rice (Oryza sativa) downregulates nutrient acquisition and arbuscular mycorrhizal (AM) symbiosis genes, causing the fungal partner to enter metabolic quiescence and retract hyphae, but upon re-watering the symbiosis is rapidly reactivated. This reversible dynamic suggests that plant‑fungus mutualisms are fragile under fluctuating water availability.

drought stress arbuscular mycorrhizal symbiosis Oryza sativa nutrient acquisition regulation re-watering recovery

Dynamic structural changes in wheat vegetative development as an adaptive response to drought stress

Authors: Leszczuk, A., Kutyrieva-Nowak, N.

Date: 2025-08-07 · Version: 1
DOI: 10.1101/2025.08.07.669084

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study investigated structural cell wall changes in wheat (Triticum aestivum) seedlings during drought, revealing rapid remodeling after five days, organ-specific responses, and both cross‑linking and degradation of wall polymers such as homogalacturonans, xylan, and AGPs. Deposition of unesterified homogalacturonans promotes calcium cross‑linking, enhancing wall rigidity and water retention.

drought stress wheat seedlings cell wall remodeling homogalacturonans arabinogalactan proteins

Stress-dependent responses of grapevine wood and fungal pathogen activity under esca and drought

Authors: Chambard, M., Cantu, D., Bortolami, G., Dell'Acqua, N., Ferrer, N., Gambetta, G., Garcia, J., Gastou, P., Massonnet, M., Moretti, S., Rochepeau, A., Petriacq, P., Foulongne-Oriol, M., Delmas, C. E. L.

Date: 2025-08-07 · Version: 1
DOI: 10.1101/2025.08.05.668645

Category: Plant Biology

Model Organism: Vitis vinifera

AI Summary

The study used wood metatranscriptomics, metabolomics, and metabarcoding to compare grapevine (Vitis vinifera) responses to drought and esca leaf symptom expression, revealing distinct but overlapping transcriptomic and metabolic signatures, including activation of phenylpropanoid and stilbenoid pathways. Drought reduced esca symptom expression, associated with decreased abundance of the wood‑decay fungus Fomitiporia mediterranea and altered fungal virulence factor expression, while increasing the relative abundance and anti‑oxidative gene expression of Phaeomoniella chlamydospora.

drought stress esca disease grapevine (Vitis vinifera) wood metatranscriptomics metabolomics
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