Latest 76 Papers

Genetic Insights from Line x Tester Analysis of Maize Lethal Necrosis Testcrosses for Developing Multi-Stress-Resilient Hybrids in Sub-Saharan Africa

Authors: Gowda, M., Beyene, Y., L.M., S., Ogugo, V., Amadu, M. K., Chaikam, V.

Date: 2025-12-09 · Version: 1
DOI: 10.64898/2025.12.07.692857

Category: Plant Biology

Model Organism: Zea mays

AI Summary

A comprehensive multi‑environment trial of 437 maize testcross hybrids derived from 38 MLN‑tolerant lines and 29 testers identified additive genetic effects as the primary driver of grain yield, disease resistance, and drought tolerance. Strong general combining ability and specific combining ability patterns were uncovered, with top hybrids delivering up to 5.75 t ha⁻¹ under MLN pressure while maintaining high performance under optimum and drought conditions. The study provides a framework for selecting elite parents and exploiting both additive and non‑additive effects to develop resilient maize hybrids for sub‑Saharan Africa.

maize lethal necrosis (MLN) drought tolerance grain yield combining ability GGE biplot

The Pik NLR pair accumulates at the plasma membrane as a hetero-oligomeric sensor-helper immune protein complex prior to activation

Authors: Pai, H., Contreras, M. P., Salguero Linares, J., Luedke, D., Posbeyikian, A., Kourelis, J., Kamoun, S., Marchal, C.

Date: 2025-12-02 · Version: 1
DOI: 10.64898/2025.11.30.691369

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study examined the pre‑activation state of the rice NLR pair Pik‑1 (sensor) and Pik‑2 (helper) when transiently expressed in Nicotiana benthamiana leaves. Both wild‑type and engineered Pik‑1 variants constitutively associate with Pik‑2 to form ~1 MDa hetero‑oligomeric complexes that localize to the plasma membrane in the absence of effector. These results reveal that some NLRs exist as pre‑assembled membrane‑associated complexes prior to pathogen perception.

NLR oligomerization Pik-1/Pik-2 sensor‑helper pair resting state complex plasma membrane localization Oryza sativa

Ethylene signal-driven plant-multitrophic synergy boosts crop performance

Authors: Baer, M., Zhong, Y., Yu, B., Tian, T., He, X., Gu, L., Huang, X., Gallina, E., Metzen, I. E., Bucher, M., Song, R., Gutjahr, C., SU, Z., Moya, Y., von Wiren, N., Zhang, L., Yuan, L., Shi, Y., Wang, S., Qi, W., Baer, M., Zhao, Z., Li, C., Li, X., Hochholdinger, F., Yu, P.

Date: 2025-11-29 · Version: 1
DOI: 10.1101/2025.11.28.690471

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study uncovers how arbuscular mycorrhizal (AM) fungi induce lateral root formation in maize by activating ethylene‑responsive transcription factors (ERFs) that regulate pericycle cell division and reshape flavonoid metabolism, lowering inhibitory flavonols. It also shows that the rhizobacterium Massilia collaborates with AM fungi, degrading flavonoids and supplying auxin, thereby creating an integrated ethylene‑flavonoid‑microbe signaling network that can be harnessed to improve nutrient uptake and crop sustainability.

arbuscular mycorrhizal fungi lateral root development ethylene‑responsive transcription factors flavonoid metabolism Zea mays

Consistent drought regulation in grapevine is driven by directional transcription factor activity

Authors: Vasquez-Marambio, G., Moyano, T., Navarro, D., Sequeida, A., Gainza-Cortes, F., Matus, J. T., Orellana, A., Alvarez, J. M.

Date: 2025-11-16 · Version: 1
DOI: 10.1101/2025.11.14.688560

Category: Plant Biology

Model Organism: Vitis vinifera

AI Summary

The study performed a meta‑transcriptomic analysis of over twenty drought versus control experiments in Vitis vinifera and two hybrid rootstocks, identifying a core set of 4,617 drought‑responsive genes. Using transcription factor binding motif enrichment and random‑forest machine learning, gene regulatory networks were built, revealing key regulators such as ABF2, MYB30A, and a novel HMG‑box protein. These regulators and network hierarchies provide candidate targets for breeding and biotechnological improvement of grapevine drought tolerance.

drought tolerance Vitis vinifera gene regulatory network transcription factors meta‑transcriptomics

The O-glycosyltransferase SECRET AGENT Participates in Abscisic Acid-Induced Microtubule Remodeling and Stomatal Closure in Arabidopsis thaliana

Authors: Sun, P., Wu, Y., Wang, P., Hu, M., Wang, Z., Yu, R., Li, J.

Date: 2025-10-31 · Version: 1
DOI: 10.1101/2025.10.29.683829

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reveals that the Arabidopsis O-GlcNAc transferase SEC is essential for timely ABA‑induced stomatal closure and drought tolerance, with sec-5 mutants showing delayed closure and increased water loss, while SEC overexpression enhances responsiveness. SEC influences guard‑cell microtubule remodeling, as loss of SEC impairs microtubule reorganization and SEC directly interacts with tubulin α‑4, suggesting tubulin as a target of O‑GlcNAcylation.

O-GlcNAc transferase ABA-induced stomatal closure microtubule dynamics drought tolerance Arabidopsis thaliana

Systematic Analysis of the EXO70 Gene Family in Kiwifruit Species: Evolutionary Selection and Potential Functions in Plant Immunity

Authors: Cui, W., DENG, C. H., Yoon, M. H., Zarsky, V., Rikkerink, E. H. A.

Date: 2025-10-28 · Version: 1
DOI: 10.1101/2025.10.28.684437

Category: Plant Biology

Model Organism: Actinidia spp.

AI Summary

A genome-wide survey identified 217 EXO70 genes across five kiwifruit (Actinidia spp.) species, classifying them into three subfamilies and nine clades and revealing lineage‑specific expansions, especially in EXO70C, EXO70E, and EXO70H. Functional assays demonstrated that kiwifruit EXO70B1 interacts with the immune hub protein RIN4_1, suggesting a conserved EXO70‑RIN4 module in plant immunity. The study provides a foundational resource for exploring EXO70‑mediated disease resistance in kiwifruit.

EXO70 gene family Actinidia vesicle trafficking plant immunity RIN4 interaction

Unravelling the intraspecific variation in drought responses in seedlings of European black pine (Pinus nigra J.F. Arnold)

Authors: Ahmad, M., Hammerbacher, A., Priemer, C., Ciceu, A., Karolak, M., Mader, S., Olsson, S., Schinnerl, J., Seitner, S., Schoendorfer, S., Helfenbein, P., Jakub, J., Breuer, M., Espinosa, A., Caballero, T., Ganthaler, A., Mayr, S., Grosskinsky, D. K., Wienkoop, S., Schueler, S., Trujillo-Moya, C., van Loo, M.

Date: 2025-10-21 · Version: 1
DOI: 10.1101/2025.10.20.683360

Category: Plant Biology

Model Organism: Pinus nigra

AI Summary

The study examined drought tolerance across nine provenances of the conifer Pinus nigra using high‑throughput phenotyping combined with metabolomic and transcriptomic analyses under controlled soil‑drying conditions. Drought tolerance, measured by the decline in Fv/Fm, varied among provenances but was not linked to a climatic gradient and was independent of growth, with tolerant provenances showing distinct flavonoid and diterpene profiles and provenance‑specific gene expression patterns. Integrating phenotypic and molecular data revealed metabolic signatures underlying drought adaptation in this non‑model conifer.

drought tolerance Pinus nigra metabolomics transcriptomics phenotyping

Additive and partially dominant effects from genomic variation contribute to rice heterosis

Authors: Dan, Z., Chen, Y., Zhou, W., Xu, Y., Huang, J., Chen, Y., Meng, J., Yao, G., Huang, W.

Date: 2025-10-17 · Version: 4
DOI: 10.1101/2024.07.16.603817

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study systematically identified heterosis-associated genes and metabolites in rice, functionally validated three genes influencing seedling length, and integrated these molecules into network modules to explain heterosis variance. Predominant additive and partially dominant inheritance patterns were linked to parental genomic variants and were shown to affect 17 agronomic traits in rice, as well as yield heterosis in maize and biomass heterosis in Arabidopsis. The work highlights the quantitative contribution of transcriptomic and metabolomic variation, especially in phenylpropanoid biosynthesis, to hybrid vigor.

heterosis Oryza sativa additive and partially dominant effects metabolomics phenylpropanoid biosynthesis

KATANIN promotes cell elongation and division to generate proper cell numbers in maize organs

Authors: Martinez, S. E., Lau, K. H., Allsman, L. A., Irahola, C., Habib, C., Diaz, I. Y., Ceballos, I., Panteris, E., Bommert, P., Wright, A. J., Weil, C., Rasmussen, C.

Date: 2025-10-06 · Version: 1
DOI: 10.1101/2025.10.05.680529

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study identifies two maize genes, Discordia3a and Discordia3b, that encode the microtubule‑severing protein KATANIN. Loss‑of‑function allele combinations reduce microtubule severing, impair cell elongation, delay mitotic entry, and disrupt preprophase band and nuclear positioning, leading to dwarfed, misshapen plants.

KATANIN microtubule severing Zea mays preprophase band cell elongation

Divergent Strategies of Mycorrhiza-Mediated Drought Adaptation in Poplar

Authors: Shi, H., Lu, Z., Polle, A.

Date: 2025-10-02 · Version: 1
DOI: 10.1101/2025.10.01.679871

Category: Plant Biology

Model Organism: Populus spp.

AI Summary

The study compared physiological and transcriptomic responses of poplar trees colonized by the ectomycorrhizal fungi Paxillus involutus or Cenococcum geophilum under normal, drought, and recovery conditions. Cenococcum-colonized plants showed constitutive up‑regulation of heat‑shock proteins, galactinol synthase, and aquaporins and maintained water status and photosynthesis during severe drought, whereas Paxillus colonization promoted growth and nitrogen‑use efficiency and enabled rapid recovery through drought‑induced leaf shedding. These contrasting strategies illustrate species‑specific positions on the growth‑defense trade‑off in ectomycorrhizal symbiosis.

ectomycorrhizal fungi drought tolerance Populus Paxillus involutus Cenococcum geophilum
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