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AI-summarized plant biology research papers from bioRxiv

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Ribosome profiling reveals distinct translational programs underlying Arabidopsis seed dormancy and germination

Authors: Gomez Roldan, V. M., Layat, E., Bailey-Serres, J., Bazin, J., Bailly, C.

Date: 2026-01-08 · Version: 1
DOI: 10.64898/2026.01.08.696037

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study used genome‑wide ribosome profiling together with RNA‑seq to dissect translational regulation during the shift from seed dormancy to germination in Arabidopsis thaliana. It found that dormant seeds maintain a poised translational state with ribosomes pre‑positioned on stored mRNAs, and that selective changes in translational efficiency—particularly involving uORF‑mediated repression—drive germination independent of transcript levels. Functional assays confirmed that specific uORFs act as translational checkpoints during early imbibition.

seed dormancy translational regulation ribosome profiling upstream open reading frames Arabidopsis thaliana

MAP70-2 is required for division plane orientation during 3D differential growth within a tissue

Authors: Winter, Z., Stöckle, D., Sasaki, T., Marc Martin, S., Oda, Y., Vermeer, J. E.

Date: 2026-01-08 · Version: 1
DOI: 10.64898/2026.01.07.697928

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reveals that the microtubule-associated protein MAP70-2 integrates mechanical and biochemical signals to guide division plane orientation during early lateral root primordium formation in Arabidopsis thaliana. Dynamic MAP70-2 localization to cell corners and the cortical division zone precedes cytokinesis, and loss of MAP70-2 results in misoriented divisions and malformed lateral roots, highlighting its role in three‑dimensional differential growth under mechanical constraints.

lateral root development MAP70-2 cell division orientation mechanical feedback Arabidopsis thaliana

Salicylic acid contributes to plant defense against a necrotroph: evidence from a transgenic NahG-expressing strain in Botrytis cinerea.

Authors: Hoppe, G., Donaire-Guerra, A., Lopez-Leiva, D., Perez-Lara, G., Blanco-Herrera, F., Herrera-Vasquez, A., Canessa, P.

Date: 2026-01-08 · Version: 1
DOI: 10.64898/2026.01.07.698134

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

Botrytis cinerea mutants engineered to constitutively express the salicylate‑hydroxylase NahG grew better on salicylic‑acid media and showed heightened virulence on Arabidopsis thaliana and Phaseolus vulgaris, an effect that required host SA biosynthesis. Genomic analysis identified four fungal salicylate‑hydroxylase‑like genes whose expression varied during infection, suggesting B. cinerea can degrade host SA to promote colonization.

Botrytis cinerea salicylic acid degradation NahG virulence Arabidopsis thaliana

Plant Kelch phosphatases are Ser/Thr phosphatases involved in cell cycle regulation

Authors: Rico-Resendiz, F., Pri-Tal, O., Raia, P., Moretti, A., Chen, H., Yu, J., Broger, L., Fuchs, C., Hothorn, L. A., Loubery, S., Hothorn, M.

Date: 2026-01-06 · Version: 1
DOI: 10.64898/2026.01.06.697939

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reveals that the Kelch phosphatase BSU1, previously thought to act as a tyrosine phosphatase in brassinosteroid signaling, actually functions as a PP1-like serine/threonine phosphatase whose activity is inhibited by CDK-mediated phosphorylation of its C‑terminal tail. Structural analysis, mutagenesis, and genetic experiments in Arabidopsis and Marchantia demonstrate that this regulatory mechanism links BSU1 to cell‑cycle control, affecting stomatal patterning, fertility, and undifferentiated cell mass formation.

brassinosteroid signaling BSU1 phosphatase PP1-like regulation cell cycle control Arabidopsis thaliana

Southern South American Maize Landraces: A Source of Phenotypic Diversity

Authors: Dudzien, T. L., Freilij, D., Defacio, R. A., Fernandez, M., Paniego, N. B., Lia, V. V., Dominguez, P. G.

Date: 2026-01-03 · Version: 1
DOI: 10.64898/2026.01.02.697242

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study assessed 17 morphological, biochemical, and salt‑stress tolerance traits in 19 maize (Zea mays) landrace accessions from northern Argentina, revealing substantial variation both within and among accessions. Redundancy analysis linked phenotypic variation to the altitude of the collection sites, underscoring the potential of these landraces as sources of diverse biochemical and stress‑related traits for breeding.

Zea mays maize landraces phenotypic diversity biochemical traits salt stress tolerance

A chloroplast-localized protein AT4G33780 regulates Arabidopsis development and stress-associated responses

Authors: Yang, Z.

Date: 2026-01-03 · Version: 1
DOI: 10.64898/2026.01.03.697459

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study characterizes the chloroplast‑localized protein AT4G33780 in Arabidopsis thaliana using CRISPR/Cas9 knockout and overexpression lines, revealing tissue‑specific expression and context‑dependent effects on seed germination, seedling growth, vegetative development, and root responses to nickel stress. Integrated transcriptomic (RNA‑seq) and untargeted metabolomic analyses show extensive transcriptional reprogramming—especially of cell‑wall genes—and altered central energy metabolism, indicating AT4G33780 coordinates metabolic state with developmental regulation rather than controlling single pathways.

AT4G33780 chloroplast regulator Arabidopsis thaliana transcriptomics metabolomics

Integrative analysis of papain-like cysteine proteases and cystatins reveals stress-dependent regulatory modules in Arabidopsis thaliana

Authors: Wu, S., Yi, X., Li, S., Zhao, B.

Date: 2026-01-02 · Version: 1
DOI: 10.64898/2025.12.31.697236

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study re-analyzed AtGenExpress microarray data to profile expression of Arabidopsis papain-like cysteine proteases (PLCPs) and cystatins under bacterial infection, wounding, and drought, and performed in vitro assays to determine cystatin inhibition specificity for abundant PLCPs. Integrating co‑expression and inhibition data with support vector machine modeling revealed distinct PLCP‑cystatin modules for virulent versus avirulent bacterial infections and overlapping modules between drought and basal defense, indicating shared regulatory programs across stress types.

papain-like cysteine proteases cystatins Arabidopsis thaliana stress response co-expression network

NPF4.6-mediated ABA transport modulates stomatal responses to fluctuating light

Authors: Katsuhama, N., Yamauchi, R., Takebayashi, Y., Yokota Hirai, M., Seo, M., Yamori, W.

Date: 2025-12-31 · Version: 1
DOI: 10.64898/2025.12.30.697139

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study investigated the role of the ABA transporter NPF4.6 in Arabidopsis thaliana by analyzing loss-of-function mutants under steady and fluctuating light. Mutants displayed faster stomatal opening, higher CO2 assimilation, and increased shoot biomass under well‑watered, dynamic‑light conditions, while showing no advantage under drought stress, indicating NPF4.6 fine‑tunes stomatal kinetics in variable light environments.

NPF4.6 stomatal kinetics fluctuating light CO2 assimilation Arabidopsis thaliana

Nuclear SnRK1 activity delays clubroot development in Arabidopsis by reducing sink strength

Authors: Vijayakumar, H., Guillaume, N., Vandesteene, L., Van Dijck, P., Van den Ende, W., De Coninck, B., Rolland, F.

Date: 2025-12-31 · Version: 1
DOI: 10.64898/2025.12.31.697172

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study investigates the role of the SNF1-related kinase 1 (SnRK1) in conferring quantitative resistance to clubroot disease caused by Plasmodiophora brassicae in Arabidopsis thaliana. Increased nuclear SnRK1 activity suppresses disease development by down‑regulating sucrose transporter and cell wall invertase expression and activity, thereby reducing sink strength, while the pathogen effector PBZF1 interferes with SnRK1 nuclear translocation.

SnRK1 clubroot Arabidopsis thaliana sucrose transporters cell wall invertase

NT-C2-Dependent Phosphoinositide Binding Controls PLASTID MOVEMENT IMPAIRED1 Localization and Function

Authors: Cieslak, D., Staszalek, Z., Hermanowicz, P., Łabuz, J. M., Dobrowolska, G., Sztatelman, O.

Date: 2025-12-31 · Version: 1
DOI: 10.64898/2025.12.30.697064

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identifies the extended NT‑C2 domain of Plastid Movement Impaired 1 (PMI1) as the main membrane‑binding module that interacts with PI4P and PI(4,5)P2, requiring basic residues for plasma‑membrane association. Calcium binding by the NT‑C2 domain modulates its phosphoinositide preference, and cytosolic Ca2+ depletion blocks blue‑light‑induced PMI1 redistribution, indicating that both the NT‑C2 domain and adjacent intrinsically disordered regions are essential for PMI1’s role in chloroplast movement.

chloroplast movement PMI1 NT-C2 domain phosphoinositide binding calcium signaling
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