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AI-summarized plant biology research papers from bioRxiv

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Multi-Level Characterization Reveals Divergent Heat Response Strategies Across Wheat Genotypes of Different Ploidy

Authors: Arenas-M, A., Mino, I., Uauy, C., Calderini, D. F., Canales, J.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.701169

Category: Plant Biology

Model Organism: Multi-species

AI Summary

Field experiments combined with RNA sequencing revealed that wheat ploidy influences heat stress resilience, with tetraploid T. turgidum showing the smallest yield loss and hexaploid T. aestivum mounting the largest transcriptional response. Ploidy-dependent differences were observed in differential gene expression, alternative splicing—including hexaploid-specific exon skipping of NF‑YB—and co‑expression networks linked to grain traits, highlighting candidate pathways for breeding heat‑tolerant wheat.

heat stress wheat ploidy RNA sequencing differential gene expression alternative splicing

The genetic architecture of leaf vein density traits and its importance for photosynthesis in maize

Authors: Coyac-Rodriguez, J. L., Perez-Limon, S., Hernandez-Jaimes, E., Hernandez-Coronado, M., Camo-Escobar, D., Alonso-Nieves, A. L., Ortega-Estrada, M. d. J., Gomez-Capetillo, N., Sawers, R. J., Ortiz-Ramirez, C. H.

Date: 2026-01-15 · Version: 1
DOI: 10.64898/2026.01.14.699362

Category: Plant Biology

Model Organism: Zea mays

AI Summary

Using diverse Mexican maize varieties and a MAGIC population, the study demonstrated that leaf vein density is both variable and plastic, correlating positively with photosynthetic rates for small intermediate veins and increasing under heat in drought-adapted lines. Twelve QTLs linked to vein patterning were identified, highlighting candidate genes for intermediate vein development and shedding light on the evolution of high-efficiency C4 leaf architecture.

leaf venation density C4 photosynthesis Zea mays QTL mapping MAGIC population

Root phenolics as potential drivers of preformed defenses and reduced disease susceptibility in a paradigm bread wheat mixture

Authors: Mathieu, L., Chloup, A., Marty, S., Savajols, J., Paysant-Le Roux, C., Launay-Avon, A., Martin, M.-L., Totozafy, J.-C., Perreau, F., Rochepeau, A., Rouveyrol, C., Petriacq, P., Morel, J.-B., Meteignier, L.-V., Ballini, E.

Date: 2026-01-14 · Version: 1
DOI: 10.64898/2026.01.13.699261

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study created a system that blocks root‑mediated signaling between wheat varieties in a varietal mixture and used transcriptomic and metabolomic profiling to reveal that root chemical interactions drive reduced susceptibility to Septoria tritici blotch, with phenolic compounds emerging as key mediators. Disruption of these root signals eliminates both the disease resistance phenotype and the associated molecular reprogramming.

root-mediated interactions bread wheat Septoria tritici blotch transcriptomics metabolomics

Ultra large-scale 2D clinostats uncover environmentally derived variation in tomato responses to simulated microgravity

Authors: Hostetler, A. N., Kennebeck, E., Reneau, J. W., Birtell, E., Caldwell, D. L., Iyer-Pascuzzi, A. S., Sparks, E. E.

Date: 2026-01-13 · Version: 2
DOI: 10.1101/2025.05.16.654566

Category: Plant Biology

Model Organism: Solanum lycopersicum (tomato)

AI Summary

The study employed ultra large‑scale 2D clinostats to grow tomato (Solanum lycopersicum) plants beyond the seedling stage under simulated microgravity and upright control conditions across five sequential trials. Simulated microgravity consistently affected plant growth, but the magnitude and direction of the response varied among trials, with temperature identified as a significant co‑variant; moderate heat stress surprisingly enhanced growth under simulated microgravity. These results highlight the utility of large‑scale clinostats for dissecting interactions between environmental factors and simulated microgravity in plant development.

simulated microgravity ultra large-scale clinostat tomato (Solanum lycopersicum) heat stress plant growth interaction

The STA1-DOT2 interaction promotes nuclear speckle formation and splicing robustness in growth and heat stress responses

Authors: Kim, H., Yu, K.-j., Park, S. Y., Seo, D. H., Jeong, D.-H., Kim, W. T., Yun, D.-J., Lee, B.-h.

Date: 2026-01-12 · Version: 1
DOI: 10.64898/2026.01.11.698856

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that the interaction between spliceosomal proteins STA1 and DOT2 controls nuclear speckle organization, pre‑mRNA splicing efficiency, and heat‑stress tolerance in Arabidopsis thaliana. A missense mutation in DOT2 restores the weakened STA1‑DOT2 interaction in the sta1‑1 mutant, linking interaction strength to speckle formation and transcriptome‑wide intron retention under heat stress, while pharmacological inhibition of STA1‑associated speckles reproduces the mutant phenotypes. These findings reveal a heat‑sensitive interaction node that couples spliceosome assembly to nuclear speckle dynamics and splicing robustness.

spliceosome nuclear speckles STA1‑DOT2 interaction heat stress Arabidopsis thaliana

Southern South American Maize Landraces: A Source of Phenotypic Diversity

Authors: Dudzien, T. L., Freilij, D., Defacio, R. A., Fernandez, M., Paniego, N. B., Lia, V. V., Dominguez, P. G.

Date: 2026-01-03 · Version: 1
DOI: 10.64898/2026.01.02.697242

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study assessed 17 morphological, biochemical, and salt‑stress tolerance traits in 19 maize (Zea mays) landrace accessions from northern Argentina, revealing substantial variation both within and among accessions. Redundancy analysis linked phenotypic variation to the altitude of the collection sites, underscoring the potential of these landraces as sources of diverse biochemical and stress‑related traits for breeding.

Zea mays maize landraces phenotypic diversity biochemical traits salt stress tolerance

A chloroplast-localized protein AT4G33780 regulates Arabidopsis development and stress-associated responses

Authors: Yang, Z.

Date: 2026-01-03 · Version: 1
DOI: 10.64898/2026.01.03.697459

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study characterizes the chloroplast‑localized protein AT4G33780 in Arabidopsis thaliana using CRISPR/Cas9 knockout and overexpression lines, revealing tissue‑specific expression and context‑dependent effects on seed germination, seedling growth, vegetative development, and root responses to nickel stress. Integrated transcriptomic (RNA‑seq) and untargeted metabolomic analyses show extensive transcriptional reprogramming—especially of cell‑wall genes—and altered central energy metabolism, indicating AT4G33780 coordinates metabolic state with developmental regulation rather than controlling single pathways.

AT4G33780 chloroplast regulator Arabidopsis thaliana transcriptomics metabolomics

The influence of heavy metal stress on the evolutionary transition of teosinte to maize

Authors: Acosta Bayona, J. J., Vallebueno-Estrada, M., Vielle-Calzada, J.-P.

Date: 2025-12-22 · Version: 2
DOI: 10.1101/2025.03.17.643647

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study tests whether heavy‑metal stress contributed to maize domestication by exposing teosinte (Zea mays ssp. parviglumis) and the Palomero toluqueno landrace to sublethal copper and cadmium, then analysing genetic diversity, selection signatures, and transcriptomic responses of three chromosome‑5 heavy‑metal response genes (ZmHMA1, ZmHMA7, ZmSKUs5). Results reveal strong positive selection on these genes, heavy‑metal‑induced phenotypes resembling modern maize, and up‑regulation of Tb1, supporting a role for volcanic‑derived metal stress in early maize evolution.

heavy metal stress maize domestication Zea mays positive selection Tb1

Alternative splicing of PIF4 regulates plant development under heat stress

Authors: Gonzalez, M. N., Alary, B., Szakonyi, D., Laloum, T., Duque, P., Martin, G.

Date: 2025-12-18 · Version: 1
DOI: 10.64898/2025.12.17.694898

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identified a heat‑responsive exon‑skipping event in the basic Helix‑Loop‑Helix domain of the transcription factor PIF4, which reduces PIF4 activity and promotes photomorphogenic traits in etiolated seedlings. This reveals a novel post‑transcriptional mechanism by which plants modulate PIF4 function during heat stress.

PIF4 alternative splicing heat stress photomorphogenesis post‑transcriptional regulation

QTL for Heat-Induced Stomatal Anatomy Underpin Gas Exchange Variation in Field-Grown Wheat

Authors: Chaplin, E. D., Tanaka, E., Merchant, A., Sznajder, B., Trethowan, R., Salter, W. T.

Date: 2025-12-17 · Version: 1
DOI: 10.64898/2025.12.16.694723

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study evaluated how stomatal anatomy and physiological efficiency influence wheat heat tolerance across multi‑environment field trials with 200 genotypes, using early versus delayed sowing to impose temperature stress. Findings revealed a decoupling between anatomical capacity (gsmax) and actual conductance (gs, gse) under heat, plastic shifts toward smaller, denser stomata, and identified 125 QTL linked to stomatal traits, suggesting targets for breeding climate‑resilient wheat.

stomatal conductance heat stress wheat (Triticum aestivum) QTL mapping stomatal anatomy
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