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AI-summarized plant biology research papers from bioRxiv

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METABOLIC AND TRANSCRIPTOMIC ANALYSES IDENTIFY COORDINATED RESOURCE REALLOCATION IN RESPONSE TO PHOSPHATE SUPPLY IN HEMP

Authors: Wee Y, B., Berkowitz, O., Ng, S., Pegg, A., Whelan, J., Jost, R.

Date: 2025-12-23 · Version: 2
DOI: 10.1101/2025.09.18.677093

Category: Plant Biology

Model Organism: Cannabis sativa

AI Summary

The study examined how dual‑purpose hemp (Cannabis sativa) adjusts to different phosphate levels, showing that flower biomass is maintained unless phosphate is completely removed. Integrated physiological measurements and transcriptomic profiling revealed that phosphate is reallocated to flowers via glycolytic bypasses and organic phosphate release, while key regulatory genes followed expected patterns but did not suppress uptake at high phosphate, leading to nitrate depletion that limits growth.

Cannabis sativa phosphate nutrition transcriptomics source‑sink regulation nutrient signaling

Exogenous auxins for proline regulation in heat-stressed plants

Authors: Kaleh, A. M., Whalen, J. K.

Date: 2025-12-22 · Version: 1
DOI: 10.64898/2025.12.20.695708

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The abstract proposes that microbial indole-3-acetic acid (IAA) enhances plant thermotolerance by regulating proline metabolism, coordinating early osmoprotective synthesis with later catabolism to support growth and redox balance during heat stress. This regulation is hypothesized to involve integration of auxin perception (HSP90‑TIR1), MAPK signaling (MPK‑IAA8), mitochondrial redox components (SSR1, HSCA2) and interactions with abscisic acid and ethylene, offering a framework for using auxin‑producing microbes to boost heat resilience.

microbial indole-3-acetic acid thermomorphogenesis proline metabolism auxin signaling heat stress resilience

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1
DOI: 10.64898/2025.12.13.694100

Category: Plant Biology

Model Organism: General

AI Summary

The authors used a bottom‑up thermodynamic modelling framework to investigate how plants decode calcium signals, starting from Ca2+ binding to EF‑hand proteins and extending to higher‑order decoding modules. They identified six universal Ca2+-decoding modules that can explain variations in calcium sensitivity among kinases and provide a theoretical basis for interpreting calcium signal amplitude and frequency in plant cells.

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

A photoprotection dial maps holistic light-stress response in diatoms

Authors: Croteau, D., Jaubert, M., Quemar, T., Falciatore, A., Maes, A., Bailleul, B.

Date: 2025-12-15 · Version: 1
DOI: 10.64898/2025.12.11.693581

Category: Plant Biology

Model Organism: Phaeodactylum tricornutum

AI Summary

Using ten Phaeodactylum tricornutum mutant strains with graded constitutive Lhcx1 expression, the study links NPQ induction under high light to physiological outcomes (oxidized QA, increased cyclic electron flow) and extensive transcriptomic reprogramming, affecting nearly half the genome. The approach demonstrates that higher NPQ mitigates PSII damage, boosts ATP production for repair, and drives distinct gene regulatory networks, providing a model framework for dissecting photosynthetic and gene expression integration.

non-photochemical quenching Phaeodactylum tricornutum high-light stress transcriptomics photosynthetic regulation

Molecular response of the diatom Coscinodiscus granii and its co-occurring dictyochophyte during Lagenisma coscinodisci parasite infection

Authors: Orvain, C., Bertrand, L., Moussy, A., Porcel, B. M., Vallet, M., Carradec, Q., Thurotte, A.

Date: 2025-12-12 · Version: 2
DOI: 10.1101/2025.10.10.681168

Category: Plant Biology

Model Organism: Coscinodiscus granii

AI Summary

The study establishes a tractable system using the large bloom-forming diatom Coscinodiscus granii and its natural oomycete parasite Lagenisma coscinodisci, enabling manual isolation of single host cells and stable co-cultures. High‑quality transcriptomes for both partners were assembled, revealing diverse oomycete effectors and a host transcriptional response involving proteases and exosome pathways, while also profiling the co‑occurring heterotrophic flagellate Pteridomonas sp. This tripartite platform provides a unique marine model for dissecting molecular mechanisms of oomycete‑diatom interactions.

diatom‑parasite interactions oomycete effectors Coscinodiscus granii transcriptomics metabolomics

Root growth promotion by Penicillium melinii: mechanistic insights and agricultural applications

Authors: Gutierrez-Manso, L., Devesa-Aranguren, I., Conesa, C. M., Monteoliva-Garcia, G., Gonzalez-Sayer, S., Lozano-Enguita, A., Blasio, F., Ugena, L., Nolasco, J., Vazquez-Mora, A., Levy, C. C. B., Ariel Otero, E., Fernandez-Calvo, P., Moreno-Risueno, M. A., petrik, I., Pencik, A., Reguera, M., Gonzalez-Bodi, S., Huerta-Cepas, J., Sacristan, S., del Pozo, J. C., Cabrera, J.

Date: 2025-12-09 · Version: 1
DOI: 10.64898/2025.12.05.692050

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study characterizes the endophytic fungus Penicillium melinii, isolated from Arabidopsis thaliana roots, as a plant‑growth‑promoting agent that enhances root architecture and biomass across Arabidopsis, quinoa, and tomato. Integrated phenotypic, transcriptomic, and hormonal analyses reveal that the fungus stimulates auxin‑related pathways and modest stress responses, leading to increased tomato yield in field trials, underscoring its value as a model for root development and a sustainable biostimulant.

Penicillium melinii plant growth‑promoting fungus root architecture auxin signaling biostimulant

Salt stress disrupts local auxin and COP1 gradients in Arabidopsis apical hooks

Authors: van Veen, E., Kupers, J. J., Chen, X., Tang, Y. H., De Zeeuw, T., Duijts, K., Hayes, S., Testerink, C., Gommers, C. M. M.

Date: 2025-12-05 · Version: 1
DOI: 10.64898/2025.12.03.691840

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that salinity stress induces a photomorphogenic‑like response in dark‑grown Arabidopsis thaliana seedlings, resulting in reduced apical hook curvature and impaired soil emergence. This phenotype is linked to disrupted asymmetric epidermal cell elongation, decreased auxin signaling and PIN3 abundance on the hook’s concave side, repression of BBX28 expression, and loss of a spatial COP1 gradient, highlighting spatial regulation as a key factor in stress‑affected seedling development.

apical hook salinity stress COP1 spatial gradient auxin signaling BBX28 repression

Ca2+-driven nanodomain enrichment and plasma membrane proteome remodelling enable bacterial outer membrane vesicle perception in rice

Authors: Mondal, I., Das, H., Behera, S.

Date: 2025-12-02 · Version: 2
DOI: 10.1101/2025.09.17.676730

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study reveals that rice perceives Xanthomonas oryzae pv. oryzae outer membrane vesicles through a rapid calcium signal that triggers plasma‑membrane nanodomain formation and the re‑organisation of defence‑related proteins, establishing an early immune response. Without this Ca2+ signal, OMVs are not recognized and immunity is weakened.

Xanthomonas oryzae pv. oryzae outer membrane vesicles calcium signaling plasma membrane nanodomains proteomics

Identification of a putative RBOHD-FERONIA-CRK10-PIP2;6 plasma membrane complex that interacts with phyB to regulate ROS production in Arabidopsis thaliana

Authors: Mohanty, D., Fichman, Y., Pelaez-Vico, M. A., Myers, R. J., Sealander, M., Sinha, R., Morrow, J., Eckstein, R., Olson, K., Xu, C., An, H., Yoo, C. Y., Zhu, J.-K., Zhao, C., Zandalinas, S. I., Liscum, E., Mittler, R.

Date: 2025-11-26 · Version: 1
DOI: 10.1101/2025.11.23.689998

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that FERONIA and phytochrome B physically interact with the NADPH oxidase RBOHD, and that FERONIA-mediated phosphorylation of phyB is essential for RBOHD-driven ROS production under excess light stress in Arabidopsis thaliana. Additional membrane proteins CRK10 and PIP2;6 also associate with this complex, forming a plasma‑membrane assembly that integrates multiple signaling pathways to regulate stress‑induced ROS.

reactive oxygen species FERONIA phytochrome B RBOHD excess light stress

SPOROCYTELESS/NOZZLE acts together with MADS-domain transcription factors to regulate an auxin-dependent network controlling the Megaspore Mother Cell development

Authors: Cavalleri, A., Astori, C., Manrique, S., Bruzzaniti, G., Smaczniak, C., Mizzotti, C., Ruiu, A., Spano, M., Movilli, A., Gregis, V., Xu, X., Kaufmann, K., Colombo, L.

Date: 2025-11-26 · Version: 2
DOI: 10.1101/2025.03.11.641985

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study elucidates the SPL/NZZ‑dependent regulatory pathway governing megaspore mother cell (MMC) differentiation, revealing that SPL/NZZ directly targets genes and interacts with ovule‑identity MADS‑domain transcription factor complexes. Integration of multi‑omics data with genetic complementation and mutant analyses uncovers an auxin‑dependent downstream network that drives MMC formation.

megaspore mother cell SPL/NZZ MADS‑domain transcription factors auxin signaling regulatory network
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