Keywords: decoding modules, ATAC-seq, CO2-fixing enzyme, transcriptome, fruit quality

Latest 11 Papers

A Savory-based Formulation for Sustainable Management of Early Blight caused by Alternaria solani and Preservation of Tomato Fruit Quality

Authors: Lak, F., Omrani, A., Nikkhah, M. J., Gohari, A. M., Nicolaisen, M., Abuali, M., Ahmadzadeh, M.

Date: 2026-01-22 · Version: 1

DOI: 10.64898/2026.01.20.700539

Model Organism: Solanum lycopersicum

early blight Solanum lycopersicum savory essential oil biocompatible formulation fruit quality

Features affecting Cas9-Induced Editing Efficiency and Patterns in Tomato: Evidence from a Large CRISPR Dataset

Authors: Cucuy, A., Ben-Tov, D., Melamed-Bessudo, C., Honig, A., Cohen, B. A., Levy, A. A.

Date: 2026-01-07 · Version: 1

DOI: 10.64898/2026.01.06.696182

Model Organism: Solanum lycopersicum

CRISPR/Cas9 ATAC-seq chromatin accessibility microhomology‑mediated end joining tomato

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

Rubisco Dark Inhibition in Angiosperms Shows a Complex Distribution Pattern

Authors: Nehls-Ramos, C., Carmo-Silva, E., Orr, D. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.20.689527

Model Organism: Multi-species

Rubisco dark inhibition flowering plants phylogenetic analysis photosynthetic regulation CO2-fixing enzyme

SlATG8f enhances tomato thermotolerance and fruit quality via autophagy and HS pathways

Authors: Cheng, q., Xu, w., wen, c., He, Z., Song, L.

Date: 2025-09-25 · Version: 1

DOI: 10.1101/2025.09.23.678159

Model Organism: Solanum lycopersicum

SlATG8f autophagy high-temperature stress tomato fruit quality

Integrative genomic and transcriptomic analyses uncover regulatory landscape of symbiotic nitrogen fixation in soybean natural population

Authors: Li, Y., Feng, w., Feng, X., Liu, X., Hao, S., Lian, L., Gao, L., Shao, Y., Chen, H., Chen, Z., Yuan, J., Qin, L., Li, X., Li, X., Wang, X.

Date: 2025-07-23 · Version: 1

DOI: 10.1101/2025.07.18.665310

Model Organism: Glycine max

symbiotic nitrogen fixation GWAS TWAS eQTL mapping ATAC-seq

Tomato leaf transcriptomic changes promoted by long-term water scarcity stress can be largely prevented by a fungal-based biostimulant

Authors: Lopez-Serrano, L., Ferez-Gomez, A., Romero-Aranda, R., Jaime Fernandez, E., Leal Lopez, J., Fernandez Baroja, E., Almagro, G., Dolezal, K., Novak, O., Diaz, L., Bautista, R., Leon Morcillo, R. J., Pozueta Romero, J.

Date: 2025-06-28 · Version: 1

DOI: 10.1101/2025.06.26.661737

Model Organism: Solanum lycopersicum

water deficit Trichoderma harzianum culture filtrate tomato drought tolerance transcriptome

A Novel Multilayer Cultivation Strategy Improves Light Utilization and Fruit Quality in Plant Factories for Tomato Production

Authors: Furuta, H., Qu, Y., Ishizuka, D., Kawabata, S., Sano, T., Yamori, W.

Date: 2025-05-03 · Version: 1

DOI: 10.1101/2025.05.02.651818

Model Organism: Solanum lycopersicum

plant factory vertical farming tomato (Solanum lycopersicum)LED lighting fruit quality

Genome-wide analysis of phased small interfering RNAs related to tomato fruit ripening and quality

Authors: Stalder, S., Sabbione, A., Daurelio, L., Dotto, M. C.

Date: 2025-03-24 · Version: 1

DOI: 10.1101/2025.03.20.644405

Model Organism: Solanum lycopersicum

phasiRNA fruit quality Tomato ripening regulatory networks molecular breeding

A tomato line hyposensitive to simulated proximity shade shows altered auxin-related 1 gene expression and improved fruit yield under high-density field conditions

Authors: Burbano, E., Francesca, S., Palau-Rodriguez, J., Berdonces, A., Valverde-Carbajal, L., Perez-Beser, J. M., Addonizio, M., MARTINEZ GARCIA, J., Rigano, M. M., Rodriguez-Concepcion, M.

Date: 2025-03-19 · Version: 1

DOI: 10.1101/2025.03.18.643865

Model Organism: Solanum lycopersicum

far-red light supplementation shade tolerance tomato introgression line fruit quality high-density planting

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