Keywords: decoding modules, ATAC-seq, root development, SNP array, transcriptomics, Botrytis cinerea

Latest 55 Papers

When flowers turn red: Pathogen induced flavonoid and anthocyanin biosynthesis in Chrysanthemum seticuspe confers resistanceto Botrytis cinerea

Authors: Hassan Muralidhar, S., Roijen, L.-M., Pieterse, F. P. J., SharathKumar, M., Saurabh Singh, K., van der Hooft, J. J. J., Fleissner, A., van Kan, J. A. L.

Date: 2025-12-23 · Version: 1

DOI: 10.64898/2025.12.20.695701

Model Organism: Chrysanthemum seticuspe

Botrytis cinerea Chrysanthemum seticuspe flavonoids anthocyanins transcriptomics and metabolomics

METABOLIC AND TRANSCRIPTOMIC ANALYSES IDENTIFY COORDINATED RESOURCE REALLOCATION IN RESPONSE TO PHOSPHATE SUPPLY IN HEMP

Authors: Wee Y, B., Berkowitz, O., Ng, S., Pegg, A., Whelan, J., Jost, R.

Date: 2025-12-23 · Version: 2

DOI: 10.1101/2025.09.18.677093

Model Organism: Cannabis sativa

Cannabis sativa phosphate nutrition transcriptomics source‑sink regulation nutrient signaling

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

A photoprotection dial maps holistic light-stress response in diatoms

Authors: Croteau, D., Jaubert, M., Quemar, T., Falciatore, A., Maes, A., Bailleul, B.

Date: 2025-12-15 · Version: 1

DOI: 10.64898/2025.12.11.693581

Model Organism: Phaeodactylum tricornutum

non-photochemical quenching Phaeodactylum tricornutum high-light stress transcriptomics photosynthetic regulation

Molecular response of the diatom Coscinodiscus granii and its co-occurring dictyochophyte during Lagenisma coscinodisci parasite infection

Authors: Orvain, C., Bertrand, L., Moussy, A., Porcel, B. M., Vallet, M., Carradec, Q., Thurotte, A.

Date: 2025-12-12 · Version: 2

DOI: 10.1101/2025.10.10.681168

Model Organism: Coscinodiscus granii

diatom‑parasite interactions oomycete effectors Coscinodiscus granii transcriptomics metabolomics

Evaluating effects of elevated and accelerated NPQ relaxation on yield, physiology and transcription in soybean

Authors: Singh, D., de Souza, A. P., Doran, L., Hansen, J., Burgess, S. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.19.689310

Model Organism: Glycine max

photosynthetic efficiency elevated CO2 transgenic soybean VPZ construct transcriptomics

Overexpression of the sugar transporter VvHT5 turns grapevine into a better host for Botrytis cinerea

Authors: Monnereau, B., Cuello, C., Gaillard, C., Lebeurre, V., Videau, P., Zekri, O., Coutos-Thevenot, P., La Camera, S.

Date: 2025-11-17 · Version: 1

DOI: 10.1101/2025.11.17.687010

Model Organism: Vitis vinifera

VvHT5 hexose transporter Botrytis cinerea dual RNA-seq grapevine susceptibility

Modes of action and in planta antifungal activity of Olea europaea defensin OefDef1.1-derived peptide variant

Authors: Tiwari, R., Sekar, H., James, G., Tetorya, M., Usher, E., Shah, D. M.

Date: 2025-11-06 · Version: 1

DOI: 10.1101/2025.11.05.686674

Model Organism: Botrytis cinerea

synthetic antifungal peptide olive defensin Botrytis cinerea membrane permeabilization translation inhibition

SWI3 regulates male sex determination in Marchantia polymorpha

Authors: Quiles, M. L., Raval, P. K., Rensing, S. A., Gould, S. B.

Date: 2025-10-30 · Version: 1

DOI: 10.1101/2025.10.29.685095

Model Organism: Marchantia polymorpha

SWI3 chromatin regulation Marchantia polymorpha gametangiophore development transcriptomics

Unravelling the intraspecific variation in drought responses in seedlings of European black pine (Pinus nigra J.F. Arnold)

Authors: Ahmad, M., Hammerbacher, A., Priemer, C., Ciceu, A., Karolak, M., Mader, S., Olsson, S., Schinnerl, J., Seitner, S., Schoendorfer, S., Helfenbein, P., Jakub, J., Breuer, M., Espinosa, A., Caballero, T., Ganthaler, A., Mayr, S., Grosskinsky, D. K., Wienkoop, S., Schueler, S., Trujillo-Moya, C., van Loo, M.

Date: 2025-10-21 · Version: 1

DOI: 10.1101/2025.10.20.683360

Model Organism: Pinus nigra

drought tolerance Pinus nigra metabolomics transcriptomics phenotyping

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