Keywords: decoding modules, CO2-fixing enzyme, SNP array, codon usage, transcriptomics, QTL mapping

Latest 51 Papers

Arabidopsis CNL receptor SUT1 confers immunity in hydathodes against the vascular pathogen Xanthomonas campestris pv. campestris

Authors: Taks, N. W., van Hulten, M., van Splunter-Berg, J. A., Chatterjee, S., Stevens, F. D., Paauw, M., Pfeilmeier, S., van den Burg, H. A.

Date: 2025-04-11 · Version: 2

DOI: 10.1101/2024.06.20.599835

Model Organism: Arabidopsis thaliana

hydathode Xanthomonas campestris pv. campestris Arabidopsis thaliana SUT1 QTL mapping

Welcome pathogens: transient heat dampens the responses to acibenzolar-S-methyl beyond defenses in apple plants

Authors: Chavonet, E., Nguyen, B.-h., Heintz, C., Cournol, R., Siroka, J., Novak, O., Larbat, R., Gaucher, M., Brisset, M.-N., Pantin, F., Degrave, A.

Date: 2025-04-06 · Version: 1

DOI: 10.1101/2025.04.03.647103

Model Organism: Malus domestica

heat stress acibenzolar‑S‑methyl (ASM)induced immunity apple (Malus domestica)transcriptomics

Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana

Authors: Zhong, Z., Bailey, M., Kim, Y.-I., Pesaran-Afsharyan, N., Parker, B., Arathoon, L., Li, X., Rundle, C. A., Behrens, A., Nedialkova, D. D., Slavov, G., Hassani-Pak, K., Lilley, K. S., Theodoulou, F. L., Mott, R.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2025.01.08.631880

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana codon usage gene expression DNA methylation ribosome profiling

Omics-driven Identification of Candidate Genes and SNP markers in a Major QTL Controlling Early Heading in Rice

Authors: Rao, D., T, N. S., CG, G., Gaur, N., Jamaloddin, M., Maganti, S. M., Raman, M. S., Patel, H. K., Tiwari, S., Sonti, R. V.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.25.645207

Model Organism: Oryza sativa

heading date rice (Oryza sativa)QTL-seq SNP markers transcriptomics

Multilevel analysis of response to plant growth promoting and pathogenic bacteria in Arabidopsis roots and the role of CYP71A27 in this response

Authors: Koprivova, A., Ristova, D., Berka, M., Berkova, V., Türksoy, G. M., Andersen, T. G., Westhoff, P., Cerny, M., Kopriva, S.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.26.645393

Model Organism: Arabidopsis thaliana

CYP71A27 plant‑microbe interaction Pseudomonas fluorescens CH267 Burkholderia glumeae PG1 transcriptomics

The genome of the vining fern Lygodium microphyllum highlights genomic and functional differences between life phases of an invasive plant

Authors: Pelosi, J., Davenport, R., Kuo, L.-Y., Gray, L. N., Dant, A. J., Kim, E. H., Li, F.-W., Dlugosch, K. M., Krabbenhoft, T. J., Barbazuk, W. B., Sessa, E. B.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.06.640867

Model Organism: Lygodium microphyllum

Lygodium microphyllum alternation of generations transcriptomics methylome invasive species

Future flooding tolerant rice germplasm: resilience afforded beyond Sub1A gene

Authors: Anumalla, M., Khanna, A., Catolos, M., Ramos, J., Sta. Cruz, M. T., Venkateshwarlu, C., Konijerla, J., Pradhan, S. K., Dash, S. K., Das, Y., Chowdhury, D., Chetia, S. K., Das, J., Nath, P., Merugumala, G. R., Roy, B., Pradhan, N., Jana, M., Dana, I., Debnath, S., Nath, A., Prasad Singh, S., Iftekharuddaula, K. M., Ghosal, S., Ali, M., Khanam, S., Ul Islam, M. M., Faruquee, M., Tonny, H. J., Hasan, M. R., Rahman, A., Ali, J., Sinha, P., Singh, V., Rafiqul Islam, M., Bhosale, S., Kohli, A., Bhardwaj, H. R., Hussain, W.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.24.639789

Model Organism: Oryza sativa

flood tolerance rice (Oryza sativa)QTL mapping genomic selection Transition from Trait to Environment (TTE) breeding

Meltome Atlas of Arabidopsis thaliana Proteome: A Melting Temperature-Based Identification of Heat & Cold Resistant Proteins

Authors: Mohanta, T. K., Mohanta, K. M.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.22.639691

Model Organism: Arabidopsis thaliana

thermal stability melting temperature (Tm)Arabidopsis thaliana proteome codon usage gene duplication

Identification of QTLs linked to partial resistance to foot and root rot caused by Fusarium avenaceum and Fusarium oxysporum in faba bean (Vicia faba)

Authors: Webb, A., Thomas, J. E., Davis, H., McAdam, S., Angra, D., O'Sullivan, D. M., Gostkiewicz, K., Capozzi, M., Wood, T. A.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.21.639454

Model Organism: Vicia faba

Vicia faba Fusarium foot and root rot QTL mapping SNP array disease resistance

Transcriptomic insights into the role of miR394 in the regulation of flowering time in Arabidopsis thaliana

Authors: Belen, F., Bernardi, Y., Reutemann, A., Vegetti, A., Dotto, M. C.

Date: 2025-02-20 · Version: 1

DOI: 10.1101/2025.02.15.638417

Model Organism: Arabidopsis thaliana

miR394 flowering time Arabidopsis thaliana transcriptomics lncRNA

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