Keywords: decoding modules, CO2-fixing enzyme, image-based phenotyping, alternative splicing

Latest 17 Papers

A structured RNA balances DEAD-box RNA helicase function in plant alternative splicing control

Authors: Burgardt, R., Bauer, J., Reinhardt, M., Rupp, N., Engel, C., Hellmann, S. L., Sack, M., Weinberg, Z., Wachter, A.

Date: 2026-01-24 · Version: 1

DOI: 10.64898/2026.01.23.701338

Model Organism: Arabidopsis thaliana

RNA secondary structure alternative splicing DEAD-box helicase negative feedback loop intron retention

Multi-Level Characterization Reveals Divergent Heat Response Strategies Across Wheat Genotypes of Different Ploidy

Authors: Arenas-M, A., Mino, I., Uauy, C., Calderini, D. F., Canales, J.

Date: 2026-01-23 · Version: 1

DOI: 10.64898/2026.01.22.701169

Model Organism: Multi-species

heat stress wheat ploidy RNA sequencing differential gene expression alternative splicing

Full-length transcriptome atlas of Panax vietnamensis var. fuscidiscus reveals novel genes and alternative splicing in tissue-specific biosynthesis of ocotillol-type saponins

Authors: Li, W., Xu, Z., Nijabat, A., Gao, L.-z.

Date: 2026-01-22 · Version: 1

DOI: 10.64898/2026.01.19.700240

Model Organism: Panax vietnamensis var. fuscidiscus

ocotillol ginsenosides Panax vietnamensis full-length transcriptome alternative splicing triterpenoid saponin biosynthesis

Alternative splicing of PIF4 regulates plant development under heat stress

Authors: Gonzalez, M. N., Alary, B., Szakonyi, D., Laloum, T., Duque, P., Martin, G.

Date: 2025-12-18 · Version: 1

DOI: 10.64898/2025.12.17.694898

Model Organism: Arabidopsis thaliana

PIF4 alternative splicing heat stress photomorphogenesis post‑transcriptional regulation

In vivo binding by Arabidopsis SPLICING FACTOR 1 shifts 3' splice site choice, regulating circadian rhythms and immunity in plants

Authors: Agrofoglio, Y. C., Iglesias, M. J., de Leone, M. J., Hernando, C. E., Lewinski, M., Torres, S. B., Contino, G., Yanovsky, M. J., Staiger, D., Mateos, J. L.

Date: 2025-12-17 · Version: 1

DOI: 10.64898/2025.12.17.693997

Model Organism: Arabidopsis thaliana

alternative splicing branch point recognition AtSF1 circadian clock regulation plant immunity

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

Splicing regulation by RS2Z36 controls ovary patterning and fruit growth in tomato

Authors: Vraggalas, S., Rosenkranz, R. R., Keller, M., Perez-Perez, Y., Bachiri, S., Zehl, K., Bold, J., Simm, S., Ghatak, A., Weckwerth, W., Afjehi-Sadat, L., Chaturvedi, P., Testillano, P. S., Mueller-McNicoll, M., Zarnack, K., Fragkostefanakis, S.

Date: 2025-12-02 · Version: 2

DOI: 10.1101/2025.01.31.635986

Model Organism: Solanum lycopersicum (tomato)

RS2Z36 alternative splicing tomato fruit development ovary patterning proteome analysis

The structured mRNA element 45ABC mediates auto- and cross-regulation of RBP45 genes via alternative splicing

Authors: Reinhardt, M., Burgardt, R., Engel, C., Sack, M., Weinberg, Z., Wachter, A.

Date: 2025-11-27 · Version: 1

DOI: 10.1101/2025.11.25.690383

Model Organism: Arabidopsis thaliana

alternative splicing structured RNA motif RBP45 auto-regulation Arabidopsis thaliana

Rubisco Dark Inhibition in Angiosperms Shows a Complex Distribution Pattern

Authors: Nehls-Ramos, C., Carmo-Silva, E., Orr, D. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.20.689527

Model Organism: Multi-species

Rubisco dark inhibition flowering plants phylogenetic analysis photosynthetic regulation CO2-fixing enzyme

PlantCV v4: Image analysis software for high-throughput plant phenotyping

Authors: Schuhl, H., Brown, K. E., Sheng, H., Bhatt, P. K., Gutierrez, J., Schneider, D., Casto, A. L., Acosta-Gamboa, L., Ballenger, J. G., Barbero, F., Braley, J., Brown, A. M., Chavez, L., Cunningham, S., Dilhara, M., Dimech, A. M., Duenwald, J. G., Fischer, A., Gordon, J. M., Hendrikse, C., Hernandez, G. L., Hodge, J. G., Huber, M., Hurr, B. M., Jarolmasjed, S., Medina Jimenez, K., Kenney, S., Konkel, G., Kutschera, A., Lama, S., Lohbihler, M., Lorence, A., Luebbert, C., Ly, N., Manching, H. K., Marrano, A., Meerdink, S., Miklave, N. M., Mudrageda, P., Murphy, K. M., Peery, J. D., Pierik, R., Polyd

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.19.689271

Model Organism: General

PlantCV image-based phenotyping fluorescence imaging thermal imaging hyperspectral imaging

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