Keywords: decoding modules, Liquid phase separation, comparative transcriptomics, subfunctionalisation, wheat

Latest 27 Papers

Network analysis of flowering time genes suggests regulatory changes among SOC1 orthologues in response to cold in Brassica napus

Authors: Sidhu, G. S., Burrows, S., Woolfenden, H., Wells, R., Morris, R. J.

Date: 2026-01-20 · Version: 2

DOI: 10.64898/2025.12.16.694548

Model Organism: Brassica napus

flowering time gene regulatory network comparative transcriptomics Brassica napus subfunctionalisation

Physics-Informed Neural Network Methods for Predicting Plant Height Development

Authors: Shao, Y., van Eeuwijk, F., Peeters, C., Zumsteg, O., Athanasiadis, I., van Voorn, G.

Date: 2026-01-14 · Version: 1

DOI: 10.64898/2026.01.14.699475

Model Organism: Triticum aestivum

Physics-Informed Neural Network logistic ODE Long Short-Term Memory plant height prediction wheat

Evolution of HMA-integrated tandem kinases accompanied by expansion of target pathogens

Authors: Asuke, S., Tagle, A. G., Hyon, G.-S., Koizumi, S., Murakami, T., Horie, A., Niwamoto, D., Katayama, E., Shibata, M., Takahashi, Y., Islam, M. T., Matsuoka, Y., Yamaji, N., Shimizu, M., Terauchi, R., Hisano, H., Sato, K., Tosa, Y.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.15.692859

Model Organism: Multi-species

tandem kinase proteins HMA domain disease resistance barley wheat

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

Targeting granule initiation and amyloplast structure to create giant starch granules in wheat

Authors: McNelly, R., Esch, L., Ngai, Q. Y., Pohan, K., Stringer, R., Fahy, B., Warren, F., Seung, D.

Date: 2025-12-15 · Version: 1

DOI: 10.64898/2025.12.12.693964

Model Organism: Triticum aestivum

starch granule size PARC6 BGC1 wheat giant starch granules

Glycosylated diterpenes associate with early containment of Fusarium culmorum infection across wheat (Triticum aestivum L.) genotypes under field conditions

Authors: Pieczonka, S. A., Dick, F., Bentele, M., Ramgraber, L., Prey, L., Kupczyk, E., Seidl-Schulz, J., Hanemann, A., Noack, P. O., Asam, S., Schmitt-Kopplin, P., Rychlik, M.

Date: 2025-12-04 · Version: 1

DOI: 10.64898/2025.12.02.691979

Model Organism: Triticum aestivum

wheat Fusarium head blight deoxynivalenol untargeted metabolomics diterpene conjugates

Antirrhinum flower shape: unravelling gene expression across developmental axes and boundaries

Authors: Cunha, A. M., Raimundo, J., Verweij, A., Bradley, D., Coen, E., Costa, M. M. R.

Date: 2025-11-11 · Version: 1

DOI: 10.1101/2025.11.10.687484

Model Organism: Antirrhinum majus

Antirrhinum majus dorsoventral axis patterning comparative transcriptomics AmCYC/AmDIV transcription factors NGATHA‑LIKE1‑miR164 regulatory module

Nanoclustering of a plant transcription factor enables strong yet specific DNA binding

Authors: Arfman, K., Janssen, B. P. J., Romein, R., van den Boom, S., van der Woude, M., Jansen, L., Rademaker, M., Hernandez-Garcia, J., Ramalho, J. J., Dipp-Alvarez, M., Borst, J. W., Weijers, D., van Mierlo, C. P. M., Sprakel, J.

Date: 2025-11-06 · Version: 1

DOI: 10.1101/2025.11.05.686732

Model Organism: Marchantia polymorpha

Transcription factor nanoclusters Auxin Response Factors Liquid phase separation Marchantia polymorpha DNA‑binding specificity

Symbiotic diversification relies on an ancestral gene network in plants

Authors: Castanedo, L., Melkonian, K., Vernie, T., Chauderon, L., Pellen, T., Bianconi, M., Lefort, C., Libourel, C., Le Ru, A., Aziz, S., Latorre, C., Thiercelin, O., Rodde, N., Cauet, S., Callot, C., Forrest, L., Nishiyama, T., Wickell, D., Li, F.-W., Keller, J., Delaux, P.-M.

Date: 2025-11-03 · Version: 2

DOI: 10.1101/2025.04.01.646537

Model Organism: Marchantia paleacea

ericoid mycorrhizae intracellular symbiosis ancestral gene module liverwort comparative transcriptomics

Dual recognition of structurally unrelated mildew effectors underlies the broad-spectrum resistance of Pm3e in wheat

Authors: Kunz, L., Bernasconi, Z., Heuberger, M., Isaksson, J., Sotiropoulos, A. G., Stirnemann, U., Jigisha, J., Menardo, F., Wicker, T., Mueller, M. C., Keller, B.

Date: 2025-10-30 · Version: 2

DOI: 10.1101/2025.10.26.683672

Model Organism: Triticum aestivum (wheat)

broad-spectrum resistance NLR receptors Pm3 alleles powdery mildew effectors wheat

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