Keywords: decoding modules, QTL mapping, SNP array, transcriptomic analysis, DDM1, local adaptation

Latest 29 Papers

Arabidopsis CNL receptor SUT1 confers immunity in hydathodes against the vascular pathogen Xanthomonas campestris pv. campestris

Authors: Taks, N. W., van Hulten, M., van Splunter-Berg, J. A., Chatterjee, S., Stevens, F. D., Paauw, M., Pfeilmeier, S., van den Burg, H. A.

Date: 2025-04-11 · Version: 2

DOI: 10.1101/2024.06.20.599835

Model Organism: Arabidopsis thaliana

hydathode Xanthomonas campestris pv. campestris Arabidopsis thaliana SUT1 QTL mapping

Extensive photophysiological variation in wild barley is linked to environmental origin

Authors: Breil-Aubert, M., Shaw, K., Royles, J., Rodrigues Gabriel Sales, C., Walter, J., Taylor, G., Vath, R., Bdolach, E., Dev Tiwari, L., Mathan, J., Lawson, T., Fridman, E., Kromdijk, J., Ferguson, J. N.

Date: 2025-03-31 · Version: 1

DOI: 10.1101/2025.03.28.645825

Model Organism: Hordeum vulgare

crop wild relatives photophysiology genome-wide association study local adaptation stomatal conductance

Phytochrome A is required for light-inhibited germination of Aethionema arabicum seed

Authors: Merai, Z., Xu, F., Hajdu, A., Kozma-Bognar, L., Dolan, L.

Date: 2025-02-28 · Version: 1

DOI: 10.1101/2025.02.26.640300

Model Organism: Aethionema arabicum

negative photoblastic germination phytochrome A Aethionema arabicum high‑irradiance response local adaptation

Future flooding tolerant rice germplasm: resilience afforded beyond Sub1A gene

Authors: Anumalla, M., Khanna, A., Catolos, M., Ramos, J., Sta. Cruz, M. T., Venkateshwarlu, C., Konijerla, J., Pradhan, S. K., Dash, S. K., Das, Y., Chowdhury, D., Chetia, S. K., Das, J., Nath, P., Merugumala, G. R., Roy, B., Pradhan, N., Jana, M., Dana, I., Debnath, S., Nath, A., Prasad Singh, S., Iftekharuddaula, K. M., Ghosal, S., Ali, M., Khanam, S., Ul Islam, M. M., Faruquee, M., Tonny, H. J., Hasan, M. R., Rahman, A., Ali, J., Sinha, P., Singh, V., Rafiqul Islam, M., Bhosale, S., Kohli, A., Bhardwaj, H. R., Hussain, W.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.24.639789

Model Organism: Oryza sativa

flood tolerance rice (Oryza sativa)QTL mapping genomic selection Transition from Trait to Environment (TTE) breeding

Transcriptome differentiation in Cryptomeria japonica trees with different origins growing in the north and south of Japan

Authors: Ujino-Ihara, T., Uchiyama, K., Kanetani, S., Suyama, Y., Tsumura, Y.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.22.639673

Model Organism: Cryptomeria japonica

local adaptation transcriptome analysis weighted gene co‑expression network analysis (WGCNA)SNP differentiation defense response genes

Identification of QTLs linked to partial resistance to foot and root rot caused by Fusarium avenaceum and Fusarium oxysporum in faba bean (Vicia faba)

Authors: Webb, A., Thomas, J. E., Davis, H., McAdam, S., Angra, D., O'Sullivan, D. M., Gostkiewicz, K., Capozzi, M., Wood, T. A.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.21.639454

Model Organism: Vicia faba

Vicia faba Fusarium foot and root rot QTL mapping SNP array disease resistance

Loss of RdDM-independent CHH methylation is sufficient for disruption of chromosome-specific rRNA gene silencing

Authors: McKinlay, A., Enganti, R., Puppala, N. V., Saradadevi, G. P., Blevins, T., Mohannath, G.

Date: 2025-02-20 · Version: 3

DOI: 10.1101/2023.02.03.526984

Model Organism: Arabidopsis thaliana

CHH methylation rRNA gene silencing Nucleolus organizer region (NOR)CMT2 DDM1

Remote sensing reveals inter- and intraspecific variation in riparian cottonwood (Populus spp) response to drought

Authors: Seeley, M., Wiebe, B. C., Gehring, C. A., Hultine, K., Posch, B. C., Cooper, H. F., Schaefer, E. A., Bock, B. M., Abraham, A. J., Moran, M. E., Keith, A., Allan, G. J., Scull, M., Whitham, T. G., Martin, R. E., Asner, G. P., Doughty, C.

Date: 2025-02-19 · Version: 1

DOI: 10.1101/2025.02.17.638728

Model Organism: Populus fremontii

drought response leaf-level VSWIR spectroscopy UAV thermal imaging genotype-by-environment interaction local adaptation

A maize near-isogenic line population designed for gene discovery and characterization of allelic effects

Authors: Zhong, T., Mullens, A., Morales, L., Swarts, K., Stafstrom, W., He, Y., Sermons, S., Yang, Q., Lopez-Zuniga, L. O., Rucker, E., Thomason, W., Nelson, R., Jamann, T. M., Balint-Kurti, P., Holland, J. B.

Date: 2025-02-02 · Version: 1

DOI: 10.1101/2025.01.29.635337

Model Organism: Zea mays

Zea mays near‑isogenic lines genotyping‑by‑sequencing hidden Markov model QTL mapping

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