Keywords: decoding modules, QTL mapping, nitrogen availability, SNP array, transcriptomics, DDM1, drought tolerance

Latest 70 Papers

Omics-driven Identification of Candidate Genes and SNP markers in a Major QTL Controlling Early Heading in Rice

Authors: Rao, D., T, N. S., CG, G., Gaur, N., Jamaloddin, M., Maganti, S. M., Raman, M. S., Patel, H. K., Tiwari, S., Sonti, R. V.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.25.645207

Model Organism: Oryza sativa

heading date rice (Oryza sativa)QTL-seq SNP markers transcriptomics

Multilevel analysis of response to plant growth promoting and pathogenic bacteria in Arabidopsis roots and the role of CYP71A27 in this response

Authors: Koprivova, A., Ristova, D., Berka, M., Berkova, V., Türksoy, G. M., Andersen, T. G., Westhoff, P., Cerny, M., Kopriva, S.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.26.645393

Model Organism: Arabidopsis thaliana

CYP71A27 plant‑microbe interaction Pseudomonas fluorescens CH267 Burkholderia glumeae PG1 transcriptomics

Priming of retrograde signaling in wheat across multiple natural environments reveal how responses to dynamic stimuli can be integrated to alter yield, yield stability and water productivity

Authors: Bowerman, A. F., Moore, M., Yadav, A., Zhang, J., Mortimer, M. D., Plskova, Z., Tee, E. E., Au, E. K., Collinge, D. P., Estavillo, G. M., Howitt, C. A., Chan, K. X., Rebetzke, G. J., Pogson, B. J.

Date: 2025-03-13 · Version: 1

DOI: 10.1101/2025.03.10.642515

Model Organism: Triticum aestivum

retrograde signaling SAL gene deletions wheat (Triticum aestivum)drought tolerance field trial validation

The genome of the vining fern Lygodium microphyllum highlights genomic and functional differences between life phases of an invasive plant

Authors: Pelosi, J., Davenport, R., Kuo, L.-Y., Gray, L. N., Dant, A. J., Kim, E. H., Li, F.-W., Dlugosch, K. M., Krabbenhoft, T. J., Barbazuk, W. B., Sessa, E. B.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.06.640867

Model Organism: Lygodium microphyllum

Lygodium microphyllum alternation of generations transcriptomics methylome invasive species

Future flooding tolerant rice germplasm: resilience afforded beyond Sub1A gene

Authors: Anumalla, M., Khanna, A., Catolos, M., Ramos, J., Sta. Cruz, M. T., Venkateshwarlu, C., Konijerla, J., Pradhan, S. K., Dash, S. K., Das, Y., Chowdhury, D., Chetia, S. K., Das, J., Nath, P., Merugumala, G. R., Roy, B., Pradhan, N., Jana, M., Dana, I., Debnath, S., Nath, A., Prasad Singh, S., Iftekharuddaula, K. M., Ghosal, S., Ali, M., Khanam, S., Ul Islam, M. M., Faruquee, M., Tonny, H. J., Hasan, M. R., Rahman, A., Ali, J., Sinha, P., Singh, V., Rafiqul Islam, M., Bhosale, S., Kohli, A., Bhardwaj, H. R., Hussain, W.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.24.639789

Model Organism: Oryza sativa

flood tolerance rice (Oryza sativa)QTL mapping genomic selection Transition from Trait to Environment (TTE) breeding

Identification of QTLs linked to partial resistance to foot and root rot caused by Fusarium avenaceum and Fusarium oxysporum in faba bean (Vicia faba)

Authors: Webb, A., Thomas, J. E., Davis, H., McAdam, S., Angra, D., O'Sullivan, D. M., Gostkiewicz, K., Capozzi, M., Wood, T. A.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.21.639454

Model Organism: Vicia faba

Vicia faba Fusarium foot and root rot QTL mapping SNP array disease resistance

Transcriptomic insights into the role of miR394 in the regulation of flowering time in Arabidopsis thaliana

Authors: Belen, F., Bernardi, Y., Reutemann, A., Vegetti, A., Dotto, M. C.

Date: 2025-02-20 · Version: 1

DOI: 10.1101/2025.02.15.638417

Model Organism: Arabidopsis thaliana

miR394 flowering time Arabidopsis thaliana transcriptomics lncRNA

Loss of RdDM-independent CHH methylation is sufficient for disruption of chromosome-specific rRNA gene silencing

Authors: McKinlay, A., Enganti, R., Puppala, N. V., Saradadevi, G. P., Blevins, T., Mohannath, G.

Date: 2025-02-20 · Version: 3

DOI: 10.1101/2023.02.03.526984

Model Organism: Arabidopsis thaliana

CHH methylation rRNA gene silencing Nucleolus organizer region (NOR)CMT2 DDM1

Robustness of high-throughput prediction of leaf ecophysiological traits using near infra-red spectroscopy and poro-fluorometry

Authors: Coindre, E., Boulord, R., Chir, L., Freitas, V., Ryckewaert, M., Laisne, T., Bouckenooghe, V., Lis, M., Cabrera-Bosquet, L., Doligez, A., Simonneau, T., Pallas, B., Coupel-Ledru, A., Segura, V.

Date: 2025-02-07 · Version: 1

DOI: 10.1101/2025.02.07.636194

Model Organism: Vitis vinifera

drought tolerance high-throughput phenotyping spectroscopy poro-fluorometry leaf mass per area

A maize near-isogenic line population designed for gene discovery and characterization of allelic effects

Authors: Zhong, T., Mullens, A., Morales, L., Swarts, K., Stafstrom, W., He, Y., Sermons, S., Yang, Q., Lopez-Zuniga, L. O., Rucker, E., Thomason, W., Nelson, R., Jamann, T. M., Balint-Kurti, P., Holland, J. B.

Date: 2025-02-02 · Version: 1

DOI: 10.1101/2025.01.29.635337

Model Organism: Zea mays

Zea mays near‑isogenic lines genotyping‑by‑sequencing hidden Markov model QTL mapping

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