Keywords: decoding modules, SNP array, ELF4 function, DNA methylation, transcriptomics, SWI3, drought stress

Latest 89 Papers

Trichoderma afroharzianum behaves differently with respect to the host transcriptome and microbial communities under varying iron availability in pea plants

Authors: Kabir, A. H., Thapa, A., Ara Saiful, S. A., Talukder, S. K.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.05.680589

Trichoderma afroharzianum T22 iron deficiency pea (Pisum sativum)transcriptomics root microbiome

Sorghum embryos undergoing B chromosome elimination express B-variants of mitotic-related genes

Authors: Bojdova, T., Hlouskova, L., Holusova, K., Svacina, R., Hribova, E., Ilikova, I., Thiel, J., Kim, G., Pleskot, R., Houben, A., Bartos, J., Karafiatova, M.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.30.679447

Model Organism: Sorghum purpureosericeum

DNA elimination B chromosome Sorghum purpureosericeum kinetochore proteins transcriptomics

Predicting complex phenotypes using multi-omics data in maize

Authors: Creach, M., Webster, B., Newton, L., Turkus, J., Schnable, J., Thompson, A., VanBuren, R.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.30.679283

Model Organism: Zea mays

multi-omics trait prediction transcriptomics phenomics genotype-by-environment interaction

Candidatus Phytoplasma-induced Retrogressive Morphogenesis in Sesame (Sesamum indicum L.): Tissue-Specific Metabolic and Transcriptomic Reprogramming

Authors: Banerjee, S., Gangopadhyay, G.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.29.679221

Model Organism: Sesamum indicum

phytoplasma infection Sesamum indicum metabolomics transcriptomics tissue-specific response

Oxidative stress-induced proteolytic activation of polyphenol oxidase triggers an oxidized flavonoids-mediated stress signaling in Camellia sinensis

Authors: Mohapatra, S., Mishra, A., Godara, R., Bali, S., Twinkle,, Kumar, A., Kumar, R., Kumar, N., Kumar, P., Acharya, V., Dogra, V.

Date: 2025-09-25 · Version: 1

DOI: 10.1101/2025.09.23.677533

Model Organism: Camellia sinensis

polyphenol oxidase theaflavins unfolded protein response programmed cell death drought stress

A century of breeding has preserved genetic variation, accumulated favorable alleles, and shaped the Rht gene portfolio in North American spring wheat

Authors: Gill, H. S., Blecha, S., Conley, E., Brault, C., Fiedler, J., Cook, J., Glover, K., Green, A., Read, A. C., Anderson, J. A.

Date: 2025-09-23 · Version: 1

DOI: 10.1101/2025.09.22.677111

Model Organism: Triticum aestivum

Hard red spring wheat genetic diversity Rht dwarfing genes SNP array KASP genotyping

Major alleles of CDCA7α shape CG-methylation in Arabidopsis thaliana

Authors: Bourguet, P., Lorkovic, Z. J., Casado, D. K., Bapteste, V., Cho, C. H., Igolkina, A., Lee, C.-R., Nordborg, M., Berger, F., Sasaki, E.

Date: 2025-09-07 · Version: 1

DOI: 10.1101/2025.09.03.673934

Model Organism: Arabidopsis thaliana

DNA methylation CG methylation (mCG)CDCA7 DDM1 local adaptation

Light on its feet: Acclimation to high and low diurnal light is flexible in Chlamydomonas reinhardtii

Authors: Dupuis, S., Chastain, J. L., Han, G., Zhong, V., Gallaher, S. D., Nicora, C. D., Purvine, S. O., Lipton, M. S., Niyogi, K. K., Iwai, M., Merchant, S. S.

Date: 2025-09-02 · Version: 1

DOI: 10.1101/2025.08.28.672467

Model Organism: Chlamydomonas reinhardtii

photoprotection diurnal light acclimation thylakoid ultrastructure transcriptomics proteomics

Single-cell-level response to drought in Sorghum bicolor reveals novel targets for improving water use efficiency

Authors: Stata, M., Greenblum, S., Yoshinaga, Y., Koriabine, M., Keymanesh, K., Karia, P., Zhao, C., O'Malley, R. C., Rhee, S. Y.

Date: 2025-08-28 · Version: 1

DOI: 10.1101/2025.08.28.671794

Model Organism: Sorghum bicolor

drought stress Sorghum bicolor single-nucleus RNA sequencing cell-type specific transcription bioenergy crop

Drought drives reversible disengagement of root-mycorrhizal symbiosis

Authors: Akmakjian, G. Z., Nozue, K., Nakayama, H., Borowsky, A. T., Morris, A. M., Baker, K., Canto-Pastor, A., Paszkowski, U., Sinha, N., Brady, S., Bailey-Serres, J.

Date: 2025-08-27 · Version: 1

DOI: 10.1101/2025.08.25.671999

Model Organism: Oryza sativa

drought stress arbuscular mycorrhizal symbiosis Oryza sativa nutrient acquisition regulation re-watering recovery

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