Keywords: decoding modules, SNP array, ELF4 function, SWI3, comparative transcriptomics, genetic diversity

Latest 23 Papers

Network analysis of flowering time genes suggests regulatory changes among SOC1 orthologues in response to cold in Brassica napus

Authors: Sidhu, G. S., Burrows, S., Woolfenden, H., Wells, R., Morris, R. J.

Date: 2026-01-20 · Version: 2

DOI: 10.64898/2025.12.16.694548

flowering time gene regulatory network comparative transcriptomics Brassica napus subfunctionalisation

Population structure of Phytophthora infestans collected from potatoes in Ecuador, Colombia, Peru, Bolivia and Uruguay

Authors: Izarra, M. L., Coca-Morante, M., Perez, W., Sanchez, L., Gamboa, S., Valle, D., Cuaran, V., Guerra-Sierra, B. E., Kreuze, J. F.

Date: 2026-01-14 · Version: 1

DOI: 10.64898/2026.01.14.699522

Model Organism: General

Phytophthora infestans late blight genetic diversity clonal lineage mitochondrial haplotype

Genetic Diversity and Phylogenetic Relationships of Cultivated and Wild Urochloa Species Conserved in the ILRI Forage Genebank

Authors: Muktar, M. S., Lema, S. D., Negawo, A. T., Assefa, Y., Nigussie, H., Tola, H. M., Jones, C. S.

Date: 2025-12-23 · Version: 1

DOI: 10.64898/2025.12.20.695694

Model Organism: Urochloa spp.

genetic diversity population structure phylogenetic relationships Urochloa DArTseq

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

Arabidopsis EARLY FLOWERING 4 recruits EARLY FLOWERING 3 to the nucleus to facilitate gene repression

Authors: Ronald, J., Davis, S. J.

Date: 2025-12-12 · Version: 1

DOI: 10.64898/2025.12.12.688453

Model Organism: Arabidopsis thaliana

Evening Complex ELF3 nuclear recruitment ELF4 function hypocotyl elongation Arabidopsis thaliana

Antirrhinum flower shape: unravelling gene expression across developmental axes and boundaries

Authors: Cunha, A. M., Raimundo, J., Verweij, A., Bradley, D., Coen, E., Costa, M. M. R.

Date: 2025-11-11 · Version: 1

DOI: 10.1101/2025.11.10.687484

Model Organism: Antirrhinum majus

Antirrhinum majus dorsoventral axis patterning comparative transcriptomics AmCYC/AmDIV transcription factors NGATHA‑LIKE1‑miR164 regulatory module

Scaling up orphan crop research: A global genetic perspective of cowpea (Vigna unguiculata) diversity from 10,617 accessions

Authors: Pearson, S. M., Hathorn, A., Sun, S., Cruickshank, A., Shatte, T. L., Munisse, P., Macharia, M., Conner, J., Koltunow, A. M. G., Vielle-Calzada, J. P., Ozias-Akins, P., Ishii, T., Dell Acqua, M., Norton, S., Tao, Y., Jordan, D., Mace, E.

Date: 2025-11-05 · Version: 1

DOI: 10.1101/2025.11.03.686174

Model Organism: Vigna unguiculata

cowpea genetic diversity genotyping-by-sequencing germplasm collections population structure

Population genomic structure of sorghum landraces across landscape, environment and culture

Authors: Vasquez Cerda, E. E., Bellis, E. S., Das, A., Slayton, E. R., Morris, G. P., Lasky, J. R.

Date: 2025-11-04 · Version: 1

DOI: 10.1101/2025.11.02.686151

Model Organism: Sorghum bicolor

Sorghum bicolor population genomics human travel time linguistic structure genetic diversity

Symbiotic diversification relies on an ancestral gene network in plants

Authors: Castanedo, L., Melkonian, K., Vernie, T., Chauderon, L., Pellen, T., Bianconi, M., Lefort, C., Libourel, C., Le Ru, A., Aziz, S., Latorre, C., Thiercelin, O., Rodde, N., Cauet, S., Callot, C., Forrest, L., Nishiyama, T., Wickell, D., Li, F.-W., Keller, J., Delaux, P.-M.

Date: 2025-11-03 · Version: 2

DOI: 10.1101/2025.04.01.646537

Model Organism: Marchantia paleacea

ericoid mycorrhizae intracellular symbiosis ancestral gene module liverwort comparative transcriptomics

SWI3 regulates male sex determination in Marchantia polymorpha

Authors: Quiles, M. L., Raval, P. K., Rensing, S. A., Gould, S. B.

Date: 2025-10-30 · Version: 1

DOI: 10.1101/2025.10.29.685095

Model Organism: Marchantia polymorpha

SWI3 chromatin regulation Marchantia polymorpha gametangiophore development transcriptomics

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