Keywords: decoding modules, SNP array, ELF4 function, root development, codon usage, RNA‑seq

Latest 24 Papers

Microscopical and molecular characterization of the infection cycle of Phytophthora betacei during disease development on tree tomato (Solanum betaceum).

Authors: Palacios, N. G., Gonzalez-Tobon, J., Buitrago, M. C., Bautista, D., Gonzalez, L. N., Toquica, M. C., Mideros, M. F., Schornack, S., Restrepo, S.

Date: 2025-09-17 · Version: 1

DOI: 10.1101/2025.09.11.675658

Model Organism: Solanum betaceum

Phytophthora betacei Solanum betaceum infection cycle hemibiotrophic transition RNA‑seq

Esca Disease triggers local transcriptomic response and systemic DNA methylation changes in grapevine

Authors: Berger, M. M. J., Garcia, V., Rubio, B., Bortolami, G., Gambetta, G., Delmas, C. E. L., Gallusci, P.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.11.669596

Model Organism: Vitis vinifera

Esca Vitis vinifera metabolite profiling RNA‑seq DNA methylation

An Arabidopsis receptor-like kinase mediates competitive plant-plant interactions

Authors: Libourel, C., Invernizzi, M., Roux, F., Hanemian, M., Roby, D.

Date: 2025-08-12 · Version: 1

DOI: 10.1101/2025.08.10.667595

Model Organism: Arabidopsis thaliana

Quantitative Trait Locus PERK13 receptor kinase RNA‑seq Yeast two‑hybrid Plant competition

Transcriptomic prey-capture responses in convergently evolved carnivorous pitcher plants

Authors: Wakatake, T., Fukushima, K.

Date: 2025-07-18 · Version: 1

DOI: 10.1101/2025.07.16.665073

Model Organism: Cephalotus follicularis

convergent evolution pitcher plant RNA‑seq gene expression digestive enzymes

Ethylene Receptor Gain- and Loss-of-function Mutants Reveal an ETR1-dependent Transcriptional Network in Roots

Authors: White, M. G., Harkey, A., Muhlemann, J. K., Olex, A. L., Pfeffer, N. J., Houben, M., Binder, B., Muday, G. K.

Date: 2025-06-22 · Version: 3

DOI: 10.1101/2024.06.26.600793

Model Organism: Arabidopsis thaliana

ethylene signaling ETR1 root development gene regulatory network Arabidopsis

Mixed DAMP/MAMP oligosaccharides promote both growth and defense against fungal pathogens of cucumber

Authors: Pring, S., Kato, H., Taniuchi, K., Camagna, M., Saito, M., Tanaka, A., Merritt, B. A., Arguello-Miranda, O., Sato, I., Chiba, S., Takemoto, D.

Date: 2025-05-13 · Version: 2

DOI: 10.1101/2024.12.27.630494

Model Organism: Cucumis sativus

Oligo-Mix Cucumis sativus disease resistance MAP kinase activation RNA‑seq

The cytochrome P450 enzyme MpCYP78E1 inhibits meristem initiation and activity in Marchantia polymorpha

Authors: Spencer, V., Casey, C., Mosiolek, M., Jandrasits, K., Edelbacher, N., Dolan, L.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.28.651025

Model Organism: Marchantia polymorpha

Marchantia polymorpha meristem activity MpCYP78E1 RNA‑seq branching regulation

Molecular Heterosis in the Abaca (Musa textilis Nee) BC2 Hybrid, Bandala

Authors: Ereful, N. C., Alonday, R. S., Lalusin, A. G.

Date: 2025-04-22 · Version: 1

DOI: 10.1101/2025.04.21.649768

Model Organism: Musa textilis

Musa textilis Musa balbisiana expression heterosis RNA‑seq cis‑trans regulatory interaction

Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana

Authors: Zhong, Z., Bailey, M., Kim, Y.-I., Pesaran-Afsharyan, N., Parker, B., Arathoon, L., Li, X., Rundle, C. A., Behrens, A., Nedialkova, D. D., Slavov, G., Hassani-Pak, K., Lilley, K. S., Theodoulou, F. L., Mott, R.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2025.01.08.631880

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana codon usage gene expression DNA methylation ribosome profiling

Chemical Inhibition of Splicing-Related Protein Kinases Reveals Phosphorylation-Driven Regulation of RNA Alternative Splicing in Arabidopsis Seedlings

Authors: Rodriguez Gallo, M. C., Murray, C., Kennedy, C., Talasila, M., Bhatt, D., Steyer, J., Glover, M., Uhrig, R. G.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.24.644839

Model Organism: Arabidopsis thaliana

SR protein kinases alternative splicing root development chemical inhibition phosphoproteomics

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