Keywords: decoding modules, SNP array, ELF4 function, root development, deep learning, proteomics, Arabidopsis

Latest 45 Papers

KDM7-mediated oxygen sensing reprograms chromatin to enhance hypoxia tolerance in the root

Authors: Zhang, D., Chirinos, X., Del Chiaro, A., Shukla, V., Ryder, A., Beltran, A. D. P., Iacopino, S., Bota, P., Zivkovic, D., Fioriti, F., Telara, Y., Ellison, C. J., Costa, F., Elliott, P. R., Giorgi, F., Giuntoli, B., Flashman, E. G., Abreu, I., Licausi, F.

Date: 2025-11-26 · Version: 1

DOI: 10.1101/2025.11.24.690241

Model Organism: Arabidopsis thaliana

hypoxia root meristem H3K4 trimethylation KDM7 demethylase Arabidopsis

Barley (Hordeum vulgare) maintains tricarboxylic acid cycle activity without invoking the GABA shunt under salt stress

Authors: Bandehagh, A., Taylor, N. L.

Date: 2025-11-08 · Version: 1

DOI: 10.1101/2025.11.06.687118

Model Organism: Hordeum vulgare

salinity stress mitochondrial respiration tricarboxylic acid cycle metabolomics proteomics

Cross-dataset evaluation of deep learning models for plant pest and disease diagnosis

Authors: Sun, J.

Date: 2025-11-03 · Version: 2

DOI: 10.1101/2024.10.07.617111

Model Organism: Solanum lycopersicum

deep learning cross-dataset generalization tomato pest and disease dataset variability model architecture

Hyperspectral Imaging to Quantify Nodules and Detect Biological Nitrogen Fixation in Legumes

Authors: Wang, Y., de Silva, K., Song, D., Kamruzzaman, M., Brooks, M. D.

Date: 2025-10-24 · Version: 3

DOI: 10.1101/2025.07.25.666867

Model Organism: Multi-species

root nodules biological nitrogen fixation hyperspectral imaging deep learning legume species

Guard Cell-Enriched Phosphoproteome Reveals Phosphorylation of Endomembrane Proteins in Closed Stomata

Authors: Pullen, A.-M., Lyons, S., Mordant, A., Herring, L. E., Akpa, B., Rojas-Pierce, M.

Date: 2025-10-15 · Version: 1

DOI: 10.1101/2025.10.15.682613

Model Organism: General

stomatal aperture guard cells phosphorylation endomembrane trafficking proteomics

Uncovering the Molecular Regulation of Seed Development and Germination in Endangered Legume Paubrasilia echinata Through Proteomic and Polyamine Analyses

Authors: Vettorazzi, R. G., Carrari-Santos, R., Sousa, K. R., Oliveira, T. R., Grativol, C., Olimpio, G., Venancio, T. M., Pinto, V. B., Quintanilha-Peixoto, G., Silveira, V., Santa-Catarna, C.

Date: 2025-10-15 · Version: 1

DOI: 10.1101/2025.10.13.682162

Model Organism: Paubrasilia echinata

seed maturation proteomics polyamine profiling stress tolerance LEA proteins

A century of breeding has preserved genetic variation, accumulated favorable alleles, and shaped the Rht gene portfolio in North American spring wheat

Authors: Gill, H. S., Blecha, S., Conley, E., Brault, C., Fiedler, J., Cook, J., Glover, K., Green, A., Read, A. C., Anderson, J. A.

Date: 2025-09-23 · Version: 1

DOI: 10.1101/2025.09.22.677111

Model Organism: Triticum aestivum

Hard red spring wheat genetic diversity Rht dwarfing genes SNP array KASP genotyping

The seed mitochondrial proteome of Lupinus albus provides insight into energy metabolism during germination

Authors: Angermann, C., Braun, H.-P., Hildebrandt, T. M.

Date: 2025-09-21 · Version: 1

DOI: 10.1101/2025.09.19.677279

Model Organism: Lupinus albus

seed mitochondria Lupinus albus proteomics oxidative phosphorylation germination

Botanic Spectrum Analyser: A Deep Learning GUI for Plant Image Segmentation in Hyperspectral and RGB Phenotyping

Authors: Walsh, J. J., Gorgu, L., Cavel, E., Poulain, V., Gutierrez, L., Mangina, E., Negrao, S.

Date: 2025-09-17 · Version: 1

DOI: 10.1101/2025.09.14.676080

Model Organism: Multi-species

plant phenotyping image segmentation U‑Net hyperspectral imaging deep learning

Light on its feet: Acclimation to high and low diurnal light is flexible in Chlamydomonas reinhardtii

Authors: Dupuis, S., Chastain, J. L., Han, G., Zhong, V., Gallaher, S. D., Nicora, C. D., Purvine, S. O., Lipton, M. S., Niyogi, K. K., Iwai, M., Merchant, S. S.

Date: 2025-09-02 · Version: 1

DOI: 10.1101/2025.08.28.672467

Model Organism: Chlamydomonas reinhardtii

photoprotection diurnal light acclimation thylakoid ultrastructure transcriptomics proteomics

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