Keywords: decoding modules, SNP array, ELF4 function, single-cell transcriptomics, SWI3, ascorbate, Arabidopsis

Latest 16 Papers

Single-cell transcriptomic atlas reveals that vascular tissues orchestrate cell fate transitions to initiate adventitious root formation in tomato

Authors: Yang, S., Si, C., Jiang, X., Sun, X., Cao, S., Zhong, Q., Yang, R.

Date: 2025-12-27 · Version: 1

DOI: 10.64898/2025.12.27.696651

adventitious root single-cell transcriptomics vascular stem cell potential DOF11-LEA3 regulatory axis cross-species integration

Do stomatal movements have a limited dynamic range?

Authors: Muraya, F., Siqueira, J. A., Very, A.-A., Roelfsema, R.

Date: 2025-12-26 · Version: 1

DOI: 10.64898/2025.12.22.695892

Model Organism: Arabidopsis thaliana

stomatal conductance potassium transporters GORK channel AtKUP2/6/8 Arabidopsis

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

Arabidopsis EARLY FLOWERING 4 recruits EARLY FLOWERING 3 to the nucleus to facilitate gene repression

Authors: Ronald, J., Davis, S. J.

Date: 2025-12-12 · Version: 1

DOI: 10.64898/2025.12.12.688453

Model Organism: Arabidopsis thaliana

Evening Complex ELF3 nuclear recruitment ELF4 function hypocotyl elongation Arabidopsis thaliana

KDM7-mediated oxygen sensing reprograms chromatin to enhance hypoxia tolerance in the root

Authors: Zhang, D., Chirinos, X., Del Chiaro, A., Shukla, V., Ryder, A., Beltran, A. D. P., Iacopino, S., Bota, P., Zivkovic, D., Fioriti, F., Telara, Y., Ellison, C. J., Costa, F., Elliott, P. R., Giorgi, F., Giuntoli, B., Flashman, E. G., Abreu, I., Licausi, F.

Date: 2025-11-26 · Version: 1

DOI: 10.1101/2025.11.24.690241

Model Organism: Arabidopsis thaliana

hypoxia root meristem H3K4 trimethylation KDM7 demethylase Arabidopsis

SWI3 regulates male sex determination in Marchantia polymorpha

Authors: Quiles, M. L., Raval, P. K., Rensing, S. A., Gould, S. B.

Date: 2025-10-30 · Version: 1

DOI: 10.1101/2025.10.29.685095

Model Organism: Marchantia polymorpha

SWI3 chromatin regulation Marchantia polymorpha gametangiophore development transcriptomics

A century of breeding has preserved genetic variation, accumulated favorable alleles, and shaped the Rht gene portfolio in North American spring wheat

Authors: Gill, H. S., Blecha, S., Conley, E., Brault, C., Fiedler, J., Cook, J., Glover, K., Green, A., Read, A. C., Anderson, J. A.

Date: 2025-09-23 · Version: 1

DOI: 10.1101/2025.09.22.677111

Model Organism: Triticum aestivum

Hard red spring wheat genetic diversity Rht dwarfing genes SNP array KASP genotyping

MBD8 is required for LDL2-mediated transcriptional repression downstream of H3K9me2 in Arabidopsis

Authors: Mori, S., Osakabe, A., Juliarni,, Tanaka, Y., Hirayama, M., Inagaki, S., Kakutani, T.

Date: 2025-08-25 · Version: 1

DOI: 10.1101/2025.08.21.671526

Model Organism: Arabidopsis thaliana

H3K9me2 LDL2 MBD8 histone demethylation Arabidopsis

Cell-type-specific execution of effector-triggered immunity

Authors: Chhillar, H., Jo, L., Redkar, A., Kajala, K., Jones, J. D., Ding, P.

Date: 2025-07-01 · Version: 1

DOI: 10.1101/2025.06.28.662111

Model Organism: Arabidopsis thaliana

effector-triggered immunity single-cell transcriptomics cell-type-specific immune response transcriptional regulators Arabidopsis

Gene regulatory network analysis of somatic embryogenesis identifies morphogenic genes that increase maize transformation frequency

Authors: Renema, J., Luckicheva, S., Verwaerde, I., Aesaert, S., Coussens, G., De Block, J., Grones, C., Eekhout, T., De Rybel, B., Brew-Appiah, R. A. T., Bagley, C. A., Hoengenaert, L., Vandepoele, K., Pauwels, L.

Date: 2025-06-23 · Version: 1

DOI: 10.1101/2025.06.22.659756

Model Organism: Zea mays

somatic embryogenesis transcription factors Zea mays single-cell transcriptomics gene regulatory network

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