Keywords: decoding modules, SNP array, ELF4 function, transcriptome, CLPC2, root development, alternative splicing

Latest 24 Papers

CLPC2 plays specific roles in CLP complex-mediated regulation of growth, photosynthesis, embryogenesis and response to growth-promoting microbial compounds

Authors: Leal-Lopez, J., Bahaji, A., De Diego, N., Tarkowski, P., Baroja-Fernandez, E., Munoz, F. J., Almagro, G., Perez, C. E., Bastidas-Parrado, L. A., Loperfido, D., Caporalli, E., Ezquer, I., Lopez-Serrano, L., Ferez-Gomez, A., Coca-Ruiz, V., Pulido, P., Morcillo, R. J. L., Pozueta-Romero, J.

Date: 2025-11-28 · Version: 1

DOI: 10.1101/2025.11.25.690394

Model Organism: Arabidopsis thaliana

CLPC2 microbial volatile compounds chloroplast CLP protease proteomics Arabidopsis thaliana

The structured mRNA element 45ABC mediates auto- and cross-regulation of RBP45 genes via alternative splicing

Authors: Reinhardt, M., Burgardt, R., Engel, C., Sack, M., Weinberg, Z., Wachter, A.

Date: 2025-11-27 · Version: 1

DOI: 10.1101/2025.11.25.690383

Model Organism: Arabidopsis thaliana

alternative splicing structured RNA motif RBP45 auto-regulation Arabidopsis thaliana

Impact of alternative splicing on Arabidopsis proteome

Authors: Reyes, A. V., Zhang, C., Karunadasa, S. S., Shrestha, R., Grismer, T. S., Byun, D., Xu, S.

Date: 2025-10-20 · Version: 3

DOI: 10.1101/2024.02.29.582853

Model Organism: Arabidopsis thaliana

alternative splicing isoform-specific peptides intron retention proteogenomics Arabidopsis thaliana

A century of breeding has preserved genetic variation, accumulated favorable alleles, and shaped the Rht gene portfolio in North American spring wheat

Authors: Gill, H. S., Blecha, S., Conley, E., Brault, C., Fiedler, J., Cook, J., Glover, K., Green, A., Read, A. C., Anderson, J. A.

Date: 2025-09-23 · Version: 1

DOI: 10.1101/2025.09.22.677111

Model Organism: Triticum aestivum

Hard red spring wheat genetic diversity Rht dwarfing genes SNP array KASP genotyping

Tomato leaf transcriptomic changes promoted by long-term water scarcity stress can be largely prevented by a fungal-based biostimulant

Authors: Lopez-Serrano, L., Ferez-Gomez, A., Romero-Aranda, R., Jaime Fernandez, E., Leal Lopez, J., Fernandez Baroja, E., Almagro, G., Dolezal, K., Novak, O., Diaz, L., Bautista, R., Leon Morcillo, R. J., Pozueta Romero, J.

Date: 2025-06-28 · Version: 1

DOI: 10.1101/2025.06.26.661737

Model Organism: Solanum lycopersicum

water deficit Trichoderma harzianum culture filtrate tomato drought tolerance transcriptome

Ethylene Receptor Gain- and Loss-of-function Mutants Reveal an ETR1-dependent Transcriptional Network in Roots

Authors: White, M. G., Harkey, A., Muhlemann, J. K., Olex, A. L., Pfeffer, N. J., Houben, M., Binder, B., Muday, G. K.

Date: 2025-06-22 · Version: 3

DOI: 10.1101/2024.06.26.600793

Model Organism: Arabidopsis thaliana

ethylene signaling ETR1 root development gene regulatory network Arabidopsis

A network of RS splicing regulatory proteins controls light-dependent splicing and seedling development

Authors: Saile, J., Walter, H., Denecke, M., Lederer, P., Schuetz, L., Hiltbrunner, A., Lepp, K., Lobato-Gil, S., Beli, P., Wachter, A.

Date: 2025-04-08 · Version: 1

DOI: 10.1101/2025.04.07.646831

Model Organism: Arabidopsis thaliana

photomorphogenesis alternative splicing phospho-proteomics RS (SR) proteins Arabidopsis thaliana

Chemical Inhibition of Splicing-Related Protein Kinases Reveals Phosphorylation-Driven Regulation of RNA Alternative Splicing in Arabidopsis Seedlings

Authors: Rodriguez Gallo, M. C., Murray, C., Kennedy, C., Talasila, M., Bhatt, D., Steyer, J., Glover, M., Uhrig, R. G.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.24.644839

Model Organism: Arabidopsis thaliana

SR protein kinases alternative splicing root development chemical inhibition phosphoproteomics

Next-Generation Mapping of the ACINUS-Mediated Alternative Splicing Machinery and Its Regulation by O-glycosylation in Arabidopsis

Authors: Shrestha, R., Reyes, A. V., Carey, S., Karunadasa, S. S., Zhai, W., Byun, D., Lin, W.-D., Li, J., Alerte, K., Cui, H., Wang, Z.-Y., Xu, S.-L.

Date: 2025-03-26 · Version: 2

DOI: 10.1101/2025.01.04.631329

Model Organism: Arabidopsis thaliana

alternative splicing TurboID proximity labeling O-glycosylation Arabidopsis thaliana splicing factor ACINUS

MYB93 regulates responses to environmental sulphur in Arabidopsis and tomato.

Authors: Cao, X., Wilkinson, H. B., Hutton, B., McMulkin, N., Graham, N. S., Etherington, R., Oliver, A. G., Clayton, C. M., Kaur, H., Coates, J. C.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.04.641362

Model Organism: Arabidopsis thaliana

sulfur nutrition AtMYB93 root development transcriptome analysis elemental analysis

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