Keywords: decoding modules, SNP array, ELF4 function, yield, alternative splicing

Latest 17 Papers

A structured RNA balances DEAD-box RNA helicase function in plant alternative splicing control

Authors: Burgardt, R., Bauer, J., Reinhardt, M., Rupp, N., Engel, C., Hellmann, S. L., Sack, M., Weinberg, Z., Wachter, A.

Date: 2026-01-24 · Version: 1

DOI: 10.64898/2026.01.23.701338

Model Organism: Arabidopsis thaliana

RNA secondary structure alternative splicing DEAD-box helicase negative feedback loop intron retention

Multi-Level Characterization Reveals Divergent Heat Response Strategies Across Wheat Genotypes of Different Ploidy

Authors: Arenas-M, A., Mino, I., Uauy, C., Calderini, D. F., Canales, J.

Date: 2026-01-23 · Version: 1

DOI: 10.64898/2026.01.22.701169

Model Organism: Multi-species

heat stress wheat ploidy RNA sequencing differential gene expression alternative splicing

Full-length transcriptome atlas of Panax vietnamensis var. fuscidiscus reveals novel genes and alternative splicing in tissue-specific biosynthesis of ocotillol-type saponins

Authors: Li, W., Xu, Z., Nijabat, A., Gao, L.-z.

Date: 2026-01-22 · Version: 1

DOI: 10.64898/2026.01.19.700240

Model Organism: Panax vietnamensis var. fuscidiscus

ocotillol ginsenosides Panax vietnamensis full-length transcriptome alternative splicing triterpenoid saponin biosynthesis

Alternative splicing of PIF4 regulates plant development under heat stress

Authors: Gonzalez, M. N., Alary, B., Szakonyi, D., Laloum, T., Duque, P., Martin, G.

Date: 2025-12-18 · Version: 1

DOI: 10.64898/2025.12.17.694898

Model Organism: Arabidopsis thaliana

PIF4 alternative splicing heat stress photomorphogenesis post‑transcriptional regulation

In vivo binding by Arabidopsis SPLICING FACTOR 1 shifts 3' splice site choice, regulating circadian rhythms and immunity in plants

Authors: Agrofoglio, Y. C., Iglesias, M. J., de Leone, M. J., Hernando, C. E., Lewinski, M., Torres, S. B., Contino, G., Yanovsky, M. J., Staiger, D., Mateos, J. L.

Date: 2025-12-17 · Version: 1

DOI: 10.64898/2025.12.17.693997

Model Organism: Arabidopsis thaliana

alternative splicing branch point recognition AtSF1 circadian clock regulation plant immunity

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

Arabidopsis EARLY FLOWERING 4 recruits EARLY FLOWERING 3 to the nucleus to facilitate gene repression

Authors: Ronald, J., Davis, S. J.

Date: 2025-12-12 · Version: 1

DOI: 10.64898/2025.12.12.688453

Model Organism: Arabidopsis thaliana

Evening Complex ELF3 nuclear recruitment ELF4 function hypocotyl elongation Arabidopsis thaliana

Splicing regulation by RS2Z36 controls ovary patterning and fruit growth in tomato

Authors: Vraggalas, S., Rosenkranz, R. R., Keller, M., Perez-Perez, Y., Bachiri, S., Zehl, K., Bold, J., Simm, S., Ghatak, A., Weckwerth, W., Afjehi-Sadat, L., Chaturvedi, P., Testillano, P. S., Mueller-McNicoll, M., Zarnack, K., Fragkostefanakis, S.

Date: 2025-12-02 · Version: 2

DOI: 10.1101/2025.01.31.635986

Model Organism: Solanum lycopersicum (tomato)

RS2Z36 alternative splicing tomato fruit development ovary patterning proteome analysis

The structured mRNA element 45ABC mediates auto- and cross-regulation of RBP45 genes via alternative splicing

Authors: Reinhardt, M., Burgardt, R., Engel, C., Sack, M., Weinberg, Z., Wachter, A.

Date: 2025-11-27 · Version: 1

DOI: 10.1101/2025.11.25.690383

Model Organism: Arabidopsis thaliana

alternative splicing structured RNA motif RBP45 auto-regulation Arabidopsis thaliana

Impact of alternative splicing on Arabidopsis proteome

Authors: Reyes, A. V., Zhang, C., Karunadasa, S. S., Shrestha, R., Grismer, T. S., Byun, D., Xu, S.

Date: 2025-10-20 · Version: 3

DOI: 10.1101/2024.02.29.582853

Model Organism: Arabidopsis thaliana

alternative splicing isoform-specific peptides intron retention proteogenomics Arabidopsis thaliana

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