Keywords: decoding modules, SNP array, ascorbate, ELF4 function, codon usage, gene expression

Latest 14 Papers

Genome-wide Identification of the Laccase Gene Family in White Jute (Corchorus capsularis): Potential Targets for Lignin Engineering in Bast Fiber

Authors: Parida, S., Jha, D. K., Kumari, K., Pradhan, S., Dey, N., Majumder, S.

Date: 2025-12-29 · Version: 3

DOI: 10.1101/2024.07.17.603856

Model Organism: Corchorus capsularis

laccase lignification Corchorus capsularis gene expression microRNA regulation

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

Arabidopsis EARLY FLOWERING 4 recruits EARLY FLOWERING 3 to the nucleus to facilitate gene repression

Authors: Ronald, J., Davis, S. J.

Date: 2025-12-12 · Version: 1

DOI: 10.64898/2025.12.12.688453

Model Organism: Arabidopsis thaliana

Evening Complex ELF3 nuclear recruitment ELF4 function hypocotyl elongation Arabidopsis thaliana

A century of breeding has preserved genetic variation, accumulated favorable alleles, and shaped the Rht gene portfolio in North American spring wheat

Authors: Gill, H. S., Blecha, S., Conley, E., Brault, C., Fiedler, J., Cook, J., Glover, K., Green, A., Read, A. C., Anderson, J. A.

Date: 2025-09-23 · Version: 1

DOI: 10.1101/2025.09.22.677111

Model Organism: Triticum aestivum

Hard red spring wheat genetic diversity Rht dwarfing genes SNP array KASP genotyping

Impact of elevated temperature on immunity-related hormone signaling in tomato plants

Authors: Liu, K., Shivnauth, V., Castroverde, C. D. M.

Date: 2025-07-23 · Version: 1

DOI: 10.1101/2025.07.20.665745

Model Organism: Solanum lycopersicum

Tomato Pseudomonas syringae pv. tomato temperature effects defence hormone pathways gene expression

Transcriptomic prey-capture responses in convergently evolved carnivorous pitcher plants

Authors: Wakatake, T., Fukushima, K.

Date: 2025-07-18 · Version: 1

DOI: 10.1101/2025.07.16.665073

Model Organism: Cephalotus follicularis

convergent evolution pitcher plant RNA‑seq gene expression digestive enzymes

Fragaria ananassa DAM4 expression correlates with vegetative growth during endodormancy breaking

Authors: David, S., Kersten, P., Cao, X., Marcelis, L. F. M., Verdonk, J. C.

Date: 2025-07-15 · Version: 1

DOI: 10.1101/2025.07.10.664089

Model Organism: Fragaria × ananassa

DAM3 DAM4 winter dormancy Fragaria × ananassa gene expression

An extended β-finger motif is a near-universal feature of kinase fusion proteins

Authors: Powell, O. R., Gilbert, D., Wulff, B. B. H.

Date: 2025-07-14 · Version: 1

DOI: 10.1101/2025.07.14.664643

Model Organism: Multi-species

kinase fusion proteins β‑finger motif Poaceae disease resistance gene expression

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana

Authors: Zhong, Z., Bailey, M., Kim, Y.-I., Pesaran-Afsharyan, N., Parker, B., Arathoon, L., Li, X., Rundle, C. A., Behrens, A., Nedialkova, D. D., Slavov, G., Hassani-Pak, K., Lilley, K. S., Theodoulou, F. L., Mott, R.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2025.01.08.631880

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana codon usage gene expression DNA methylation ribosome profiling

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