Keywords: decoding modules, SNP array, codon usage, ELF4 function, root development, transcriptomics, phylogenomics

Latest 51 Papers

A Palearctic divide, niche conservatism and host-fungal endophyte interactions shaped the phylogeography of the grass Brachypodium sylvaticum

Authors: Decena Rodriguez, M. d. l. A., Campos, M., Calderon Pardo, D., Shiposha, V., Olonova, M., Perez-Collazos, E., Catalan, P.

Date: 2025-06-27 · Version: 1

DOI: 10.1101/2025.06.24.661274

Model Organism: Brachypodium sylvaticum

Brachypodium sylvaticum Epichloe sylvatica phylogenomics environmental niche modeling co‑divergence

Phylogenomics of Plasmopara halstedii reveals genomic regions associated with the breakdown of sunflower downy mildew resistance genes

Authors: PECRIX, Y., Dvorak, E., Labbe, F., Legrand, L., CARRERE, S., Gouzy, J., Delmotte, F., Besnard, G., Godiard, L.

Date: 2025-06-23 · Version: 1

DOI: 10.1101/2025.06.18.660304

Model Organism: Plasmopara halstedii

Plasmopara halstedii downy mildew phylogenomics genomic reshuffling effector genes

Ethylene Receptor Gain- and Loss-of-function Mutants Reveal an ETR1-dependent Transcriptional Network in Roots

Authors: White, M. G., Harkey, A., Muhlemann, J. K., Olex, A. L., Pfeffer, N. J., Houben, M., Binder, B., Muday, G. K.

Date: 2025-06-22 · Version: 3

DOI: 10.1101/2024.06.26.600793

Model Organism: Arabidopsis thaliana

ethylene signaling ETR1 root development gene regulatory network Arabidopsis

Thermotolerance in Chia (Salvia hispanica L.) is Mediated by Rapid Heat-Induced Transcriptomic Reprogramming and Lipid Remodelling in Leaves

Authors: Zare, T., Kehelpannala, C., Bhatnagar, A., Rupasinghe, T., Ebert, B., Fournier-Level, A., Roessner, U.

Date: 2025-06-02 · Version: 1

DOI: 10.1101/2025.05.30.656991

Model Organism: Salvia hispanica

heat stress Salvia hispanica transcriptomics lipidomics calcium signaling

Insights from modern & historical genomes of Neorhizobium vitis, a new pathogen causing neoplastic growths on grapevine.

Authors: Wu, X., Xi, H., Ryder, M., Searle, I. R.

Date: 2025-05-28 · Version: 1

DOI: 10.1101/2025.05.23.655691

Model Organism: Vitis vinifera

Neorhizobium vitis crown gall disease long‑read genome sequencing phylogenomics alternative pathogenic mechanisms

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Comparative multi-omics profiling of Gossypium hirsutum and Gossypium barbadense fibers at high temporal resolution reveals key differences in polysaccharide composition and associated glycosyltransferases

Authors: Swaminathan, S., Lee, Y., Grover, C. E., DeTemple, M. F., Mugisha, A. S., Sichterman, L. E., Yang, P., Xie, J., Wendel, J. F., Szymanski, D. B., Zabotina, O. A.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.26.650795

Model Organism: Multi-species

cotton fiber development polysaccharide composition glycome profiling transcriptomics glycosyltransferases

ERF transcription factor regulons underpin growth-defence trade-off under acute heat stress in rice seedlings

Authors: Nair, A. U., Vishwakarma, S., Guha, T., Kadumuri, R. V., Fritschi, F. B., Chavali, S., Allu, A. D.

Date: 2025-04-22 · Version: 1

DOI: 10.1101/2025.04.21.649784

Model Organism: Oryza sativa

heat stress Oryza sativa seedling transcriptomics ethylene responsive factors phytohormone treatment

A transcriptional dissection of the petty spurge (Euphorbia peplus L.) reproductive structure

Authors: Johnson, A. R., Bao, A., Frank, M. H.

Date: 2025-04-17 · Version: 2

DOI: 10.1101/2024.05.06.592779

Model Organism: Euphorbia peplus

cyathium transcriptomics floral development genes SEP1 paralogs Euphorbia peplus

Welcome pathogens: transient heat dampens the responses to acibenzolar-S-methyl beyond defenses in apple plants

Authors: Chavonet, E., Nguyen, B.-h., Heintz, C., Cournol, R., Siroka, J., Novak, O., Larbat, R., Gaucher, M., Brisset, M.-N., Pantin, F., Degrave, A.

Date: 2025-04-06 · Version: 1

DOI: 10.1101/2025.04.03.647103

Model Organism: Malus domestica

heat stress acibenzolar‑S‑methyl (ASM)induced immunity apple (Malus domestica)transcriptomics

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