Keywords: decoding modules, codon usage, transcriptome profiling, Marchantia polymorpha

Latest 31 Papers

The cytochrome P450 enzyme MpCYP78E1 inhibits meristem initiation and activity in Marchantia polymorpha

Authors: Spencer, V., Casey, C., Mosiolek, M., Jandrasits, K., Edelbacher, N., Dolan, L.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.28.651025

Model Organism: Marchantia polymorpha

Marchantia polymorpha meristem activity MpCYP78E1 RNA‑seq branching regulation

Replicated repurposing of an ancestral transcriptional complex in land plants

Authors: Kongsted, T. E., Romani, F., Airoldi, C. A., Haseloff, J., Glover, B. J.

Date: 2025-04-28 · Version: 1

DOI: 10.1101/2025.04.25.650595

Model Organism: Marchantia polymorpha

MBW transcriptional complex MYB transcription factor Marchantia polymorpha flavonoid pathway evolution oil body maturation

A tRNA-gRNA multiplexing system for CRISPR genome editing in Marchantia polymorpha.

Authors: Frangedakis, E., Yelina, N., Eeda, S. K., Romani, F., Fragkidis, A., Haseloff, J., Hibberd, J.

Date: 2025-04-20 · Version: 1

DOI: 10.1101/2025.04.18.649274

Model Organism: Marchantia polymorpha

CRISPR/Cas9 multiplex gRNA expression tRNA-mediated processing Marchantia polymorpha thallus transformation

Arsenic-sensing domain controls ACR3 transporter trafficking and function in Marchantia polymorpha

Authors: Mizio, K., Bonter, I., Zbieralski, K., Dolzblasz, A., Tomaszewska, P., Staszewski, J., Wawrzycka, D., Reymer, A., Bialek, W., Kriechbaumer, V., Haseloff, J., Wysocki, R., Maciaszczyk-Dziubinska, E.

Date: 2025-04-14 · Version: 1

DOI: 10.1101/2025.04.13.648538

Model Organism: Marchantia polymorpha

Arsenic detoxification ACR3 transporter Marchantia polymorpha metalloid‑proton antiporter arsenic‑sensing domain

Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana

Authors: Zhong, Z., Bailey, M., Kim, Y.-I., Pesaran-Afsharyan, N., Parker, B., Arathoon, L., Li, X., Rundle, C. A., Behrens, A., Nedialkova, D. D., Slavov, G., Hassani-Pak, K., Lilley, K. S., Theodoulou, F. L., Mott, R.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2025.01.08.631880

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana codon usage gene expression DNA methylation ribosome profiling

Functional genetics of rice <em>PISTILLATA</em> genes unravels new roles and targets in flowering time, female fertility and parthenocarpy

Authors: Zamzam, M., Basak, R., Singh, S., Prakash, S., Peesapati, R., Khanday, I., Simonini, S., Grossniklaus, U., Vijayraghavan, U.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2023.08.05.552136

Model Organism: Oryza sativa

lodicule development PI paralogs (OsMADS2/OsMADS4)flowering time regulation genome-wide binding analysis transcriptome profiling

Transcriptional plasticity of fast core chromosomes governs establishment of a fungal pathogen on evolutionarily distant plant lineages

Authors: Srivastava, V., Kaushik L S, S., Pullagurla, N. J., Zechmann, B., Di Pietro, A., Laha, D., Redkar, A.

Date: 2025-03-28 · Version: 1

DOI: 10.1101/2025.03.27.645276

Model Organism: Marchantia polymorpha

Fusarium oxysporum Marchantia polymorpha effector genes fast core chromosomes comparative transcriptomics

The minimal cell-cycle control system in Marchantia as a framework for understanding plant cell proliferation

Authors: Romani, F., Bonter, I., Rebmann, M., Takahashi, G., Guzman-Chavez, F., De Batte, F., Hirakawa, Y., Haseloff, J.

Date: 2025-03-13 · Version: 1

DOI: 10.1101/2025.03.12.642684

Model Organism: Marchantia polymorpha

Cyclin-CDK regulation Marchantia polymorpha single-cell RNA sequencing phylogenetic analysis fluorescent reporter imaging

Evolutionarily Conserved Heat-Induced Chromatin Dynamics Drive Heat Stress Responses in Plants

Authors: Wu, T.-Y., Yen, M.-R., Lin, K.-H., Thalimaraw, L., Yang, H.-R., Boonyaves, K., Cheng, C.-Y.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.05.641738

Model Organism: Marchantia polymorpha

chromatin remodeling heat stress HSFA1 Marchantia polymorpha ABA signaling

Meltome Atlas of Arabidopsis thaliana Proteome: A Melting Temperature-Based Identification of Heat & Cold Resistant Proteins

Authors: Mohanta, T. K., Mohanta, K. M.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.22.639691

Model Organism: Arabidopsis thaliana

thermal stability melting temperature (Tm)Arabidopsis thaliana proteome codon usage gene duplication

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