Keywords: decoding modules, codon usage, transcriptome profiling, quantitative resistance

Latest 12 Papers

A novel pathosystem between Aeschynomene evenia and Aphanomyces euteiches reveals new immune components in quantitative legume root-rot resistance.

Authors: Baker, M., Martinez, Y., Keller, J., Sarrette, B., Pervent, M., Libourel, C., Le Ru, A., Bonhomme, M., Gough, C., Castel, B., ARRIGHI, J.-F., Jacquet, C.

Date: 2026-01-11 · Version: 1

DOI: 10.64898/2026.01.11.698850

Model Organism: Aeschynomene evenia

legume immunity Aphanomyces euteiches quantitative resistance transcriptomics Nod factor-independent symbiosis

Gene networks associated with early endosperm proliferation and basal endosperm layer differentiation in maize

Authors: Zhang, S., Ran, D., Ryu, C.-H., Li, G., Dannenhoffer, J. M., Wang, X., Drews, G. N., Yadegari, R.

Date: 2026-01-02 · Version: 1

DOI: 10.64898/2025.12.31.697219

Model Organism: Zea mays

maize endosperm development transcriptome profiling co‑expression network MYB-related transcription factors TOR signaling

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

Unraveling synergistic and antagonistic effects of simultaneous versus single hypoxia-salt conditions in an evolutionary adapted plant species

Authors: Jordine, A., Alt, J., van Dongen, J. T., Fuertauer, L.

Date: 2025-10-10 · Version: 1

DOI: 10.1101/2025.10.09.681434

Model Organism: Salicornia europaea

combined hypoxia-salt stress Salicornia europaea transcriptome profiling synergistic vs antagonistic gene regulation carbohydrate and amino acid metabolism

The complex molecular basis of enhanced stress resilience in extreme drought-tolerant Arabis grassland species

Authors: Khan, A. S., Zumkeller, S. M., Schmitz, G., Calic, I., Ali, T., Rahnamae, N., Hoerdemann, L., Abdelwahed, L., Szymanski, J. J., de Meaux, J.

Date: 2025-10-02 · Version: 1

DOI: 10.1101/2025.10.02.680103

Model Organism: Arabis nemorensis

drought resilience polygenic regulation transcriptome profiling small RNA (miR408)cis‑regulatory motifs

Conserved 'late' effector genes from Leptosphaeria maculans inducing gene-for-gene quantitative resistance in Brassica napus semi-winter genotypes

Authors: Rabeau, C., Wagner, A., Lapalu, N., Jiquel, A., Faure, S., Fudal, I.

Date: 2025-09-23 · Version: 1

DOI: 10.1101/2025.09.22.677120

Model Organism: Brassica napus

Leptosphaeria maculans Brassica napus late effector genes quantitative resistance semi‑winter genotypes

AMF primes immune genes against Puccinia hordei (Brown rust) in Hordeum vulgare but does not reduce pathogen burden

Authors: Moulton-Brown, C. E., Brzezinska, K., Orosa-Puente, B. E., Helgason, T.

Date: 2025-09-17 · Version: 1

DOI: 10.1101/2025.09.16.676302

Model Organism: Hordeum vulgare

Barley (Hordeum vulgare)Rhizophagus irregularis Puccinia hordei mycorrhiza‑induced resistance transcriptome profiling

Molecular and Phenotypic Characterization of Telomere Repeat Binding (TRBs) Proteins in Moss: Evolutionary and Functional Perspectives

Authors: Kusova, A., Hola, M., Goffova Petrova, I., Rudolf, J., Zachova, D., Skalak, J., Hejatko, J., Klodova, B., Prerovska, T., Lycka, M., Sykorova, E., Bertrand, Y. J. K., Fajkus, J., Honys, D., Prochazkova Schrumpfova, P.

Date: 2025-06-17 · Version: 1

DOI: 10.1101/2025.06.11.659030

Model Organism: Physcomitrium patens

Telomere repeat binding proteins Physcomitrium patens knockout mutants telomere maintenance transcriptome profiling

Tracking Lesion Growth in the Field: Imaging and Deep Learning Reveal Components of Quantitative Resistance

Authors: Anderegg, J., Roth, L., Zenkl, R., McDonald, B. A.

Date: 2025-05-23 · Version: 1

DOI: 10.1101/2025.05.20.655031

Model Organism: Triticum aestivum

lesion expansion quantitative resistance Zymoseptoria tritici deep learning phenotyping wheat cultivars

Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana

Authors: Zhong, Z., Bailey, M., Kim, Y.-I., Pesaran-Afsharyan, N., Parker, B., Arathoon, L., Li, X., Rundle, C. A., Behrens, A., Nedialkova, D. D., Slavov, G., Hassani-Pak, K., Lilley, K. S., Theodoulou, F. L., Mott, R.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2025.01.08.631880

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana codon usage gene expression DNA methylation ribosome profiling

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