Keywords: decoding modules, codon usage, transcriptome reprogramming, structural variants, yield, GWAS, SBG1

Latest 28 Papers

An Axiom SNP genotyping array for potato: development, evaluation and applications

Authors: Baig, N., Thelen, K., Ayenan, M. A. T., Hartje, S., Obeng-Hinneh, E., Zgadzaj, R., Renner, J., Muders, K., Truberg, B., Rosen, A., Prigge, V., Bruckmueller, J., Luebeck, J., Van Inghelandt, D., Stich, B.

Date: 2025-08-20 · Version: 1

DOI: 10.1101/2025.08.17.670748

Model Organism: Solanum tuberosum

high-density SNP array potato (Solanum tuberosum)genomic-assisted breeding GWAS polyphenol oxidase activity

Identification of a novel link connecting indole-3-acetamide with abscisic acid biosynthesis and signaling

Authors: Moya-Cuevas, J., Ortiz-Garcia, P., Gonzalez Ortega-Villizan, A., Viguera-Leza, I., Perez-Gonzalez, A., Paz-Ares, J., Alonso-Blanco, C., Vicente-Carbajosa, J., Pollmann, S.

Date: 2025-08-20 · Version: 1

DOI: 10.1101/2025.08.15.670611

Model Organism: Arabidopsis thaliana

indole-3-acetamide (IAM)abscisic acid (ABA) signaling Arabidopsis thaliana GWAS hormone crosstalk

Whole genome sequencing-based multi-locus association mapping for kernel iron, zinc and protein content in groundnut

Authors: Sagar, U. N., Parmar, S., Gangurde, S. S., Sharma, V., Pandey, A. K., Mohinuddin, D. K., Dube, N., Bhat, R. S., John, K., Sreevalli, M. D., Rani, P. S., Singh, K., Varshney, R. K., Pandey, M. K.

Date: 2025-08-05 · Version: 1

DOI: 10.1101/2025.08.04.668427

Model Organism: Arachis hypogaea

groundnut nutritional quality GWAS SNP markers KASP

Population-level super-pangenome reveals genome evolution and empowers precision breeding in watermelon

Authors: Sun, H., Zhang, J., Liao, S., Guo, S., Zhou, Z., Zhao, X., Wu, S., Zhao, J., Gong, G., Wang, J., Li, M., Yu, Y., Ren, Y., Tian, S., Li, S., Zhang, H., Hammar, S. A., McGregor, C., Jarret, R., Wechter, P., Branham, S. E., Kousik, C., Levi, A., Grumet, R., Xu, Y., Fei, Z.

Date: 2025-07-27 · Version: 1

DOI: 10.1101/2025.07.25.666869

Model Organism: Citrullus lanatus (watermelon)

watermelon super-pangenome structural variants genome-wide association study copy number variation genomic prediction

Integrative genomic and transcriptomic analyses uncover regulatory landscape of symbiotic nitrogen fixation in soybean natural population

Authors: Li, Y., Feng, w., Feng, X., Liu, X., Hao, S., Lian, L., Gao, L., Shao, Y., Chen, H., Chen, Z., Yuan, J., Qin, L., Li, X., Li, X., Wang, X.

Date: 2025-07-23 · Version: 1

DOI: 10.1101/2025.07.18.665310

Model Organism: Glycine max

symbiotic nitrogen fixation GWAS TWAS eQTL mapping ATAC-seq

Graph pangenome reveals structural variation dynamics during cucumber breeding

Authors: Zhao, X., Yu, J., Zhang, J., Sun, H., Wu, S., Zhao, J., Zhou, Y., Hammar, S., Lin, Y.-C., Zhang, Z., Huang, S., Dymerski, R., Chen, F., Weng, Y., Grumet, R., Xu, Y., Fei, Z.

Date: 2025-07-21 · Version: 1

DOI: 10.1101/2025.07.17.665377

Model Organism: Cucumis sativus

structural variants graph pangenome cucumber domestication genomic prediction purifying selection

Exploring phenotypic and genetic variation in Lactuca with GWAS in L. sativa and L. serriola

Authors: Mehrem, S. L., Van den Ackerveken, G., Snoek, B. L.

Date: 2025-07-01 · Version: 1

DOI: 10.1101/2025.06.27.661939

Model Organism: Multi-species

Lactuca wild relatives anthocyanin accumulation leaf morphology pathogen resistance GWAS

Spatial Coordination between Leaf Gradient and Temperature Response in Barley

Authors: Fernandez, E. C., Tu, G., Dai, W., Yang, S., Liu, Z., Grzybowski, M., Liang, Z.

Date: 2025-06-27 · Version: 1

DOI: 10.1101/2025.06.24.661333

Model Organism: Hordeum vulgare

Barley (Hordeum vulgare)heat stress chlorophyll fluorescence imaging NPQ kinetics GWAS

SnRK1.1 Coordinates Organ-Specific Growth-Defense Programs via Transcriptomic Rewiring in Arabidopsis thaliana

Authors: Kalachova, T., Muller, K., Lacek, J., Pree, S., Antonova, A., Bondarenko, O., Burketova, L., Retzer, K., Weckwerth, W.

Date: 2025-04-29 · Version: 1

DOI: 10.1101/2025.04.25.650715

Model Organism: Arabidopsis thaliana

SnRK1 KIN10 transcriptome reprogramming plant immunity tissue-specific signaling

Spatial heterogeneity of disease infection attributable to neighbor genotypic identity in barley cultivars

Authors: Akram, I., Rohr, L., Shimizu, K. K., Shimizu-Inatsugi, R., Sato, Y.

Date: 2025-04-24 · Version: 1

DOI: 10.1101/2025.04.22.650038

Model Organism: Hordeum vulgare

spatial heterogeneity neighbor genotype effect barley disease resistance GWAS SpATS

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