Keywords: decoding modules, codon usage, transcriptome reprogramming, transcriptome, yield, flg22

Latest 13 Papers

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

Methionine Triggers Metabolic, Transcriptional, and Epigenetic Reprogramming in Arabidopsis Leaves

Authors: Yerushalmy, Y., Dafni, M., Rabach, N., Hacham, Y., Amir, R.

Date: 2025-11-03 · Version: 1

DOI: 10.1101/2025.11.02.686087

Model Organism: Arabidopsis thaliana

methionine metabolism Arabidopsis thaliana DNA methylation transcriptome reprogramming stress hormone pathways

Evaluation of Morpho-physiological Traits of F1 Hybrids and Estimation of Standard Heterosis of Sweet Pepper (Capsicum annuum L.) in Sylhet

Authors: Kafi, A. A., Ferdousi, J., Hossain, M. I., Islam, M. S., Nath, D. D., Karim, M. A., Roy, S. K.

Date: 2025-09-21 · Version: 1

DOI: 10.1101/2025.09.18.677104

Model Organism: Capsicum annuum

Capsicum annuum hybrid evaluation heterosis morphological traits yield

BIK1-RIN4 complex links plant immunity and pathogen virulence

Authors: Lee, H., Ko, D., Kang, H., Kim, S. H., El Kasmi, F., Dangl, J. L., Chung, E.-H.

Date: 2025-09-07 · Version: 1

DOI: 10.1101/2025.09.03.673898

Model Organism: Arabidopsis thaliana

BIK1 RIN4 PAMP-triggered immunity flg22 AvrB

TOC1 supresses PAMP-triggered immunity in Arabidopsis

Authors: Fraser, O. J. P., Spoel, S. H., van Ooijen, G.

Date: 2025-07-18 · Version: 1

DOI: 10.1101/2025.07.16.665052

Model Organism: Arabidopsis thaliana

circadian clock PAMP-triggered immunity flg22 TOC1 overexpression Arabidopsis thaliana

Tomato leaf transcriptomic changes promoted by long-term water scarcity stress can be largely prevented by a fungal-based biostimulant

Authors: Lopez-Serrano, L., Ferez-Gomez, A., Romero-Aranda, R., Jaime Fernandez, E., Leal Lopez, J., Fernandez Baroja, E., Almagro, G., Dolezal, K., Novak, O., Diaz, L., Bautista, R., Leon Morcillo, R. J., Pozueta Romero, J.

Date: 2025-06-28 · Version: 1

DOI: 10.1101/2025.06.26.661737

Model Organism: Solanum lycopersicum

water deficit Trichoderma harzianum culture filtrate tomato drought tolerance transcriptome

SnRK1.1 Coordinates Organ-Specific Growth-Defense Programs via Transcriptomic Rewiring in Arabidopsis thaliana

Authors: Kalachova, T., Muller, K., Lacek, J., Pree, S., Antonova, A., Bondarenko, O., Burketova, L., Retzer, K., Weckwerth, W.

Date: 2025-04-29 · Version: 1

DOI: 10.1101/2025.04.25.650715

Model Organism: Arabidopsis thaliana

SnRK1 KIN10 transcriptome reprogramming plant immunity tissue-specific signaling

Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana

Authors: Zhong, Z., Bailey, M., Kim, Y.-I., Pesaran-Afsharyan, N., Parker, B., Arathoon, L., Li, X., Rundle, C. A., Behrens, A., Nedialkova, D. D., Slavov, G., Hassani-Pak, K., Lilley, K. S., Theodoulou, F. L., Mott, R.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2025.01.08.631880

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana codon usage gene expression DNA methylation ribosome profiling

Meltome Atlas of Arabidopsis thaliana Proteome: A Melting Temperature-Based Identification of Heat & Cold Resistant Proteins

Authors: Mohanta, T. K., Mohanta, K. M.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.22.639691

Model Organism: Arabidopsis thaliana

thermal stability melting temperature (Tm)Arabidopsis thaliana proteome codon usage gene duplication

Pattern-triggered immunity in blue and white seed cultivars of Papaver somniferum

Authors: Hernandez Orozco, J. S., Iakovenko, O., Zeiner, A., Hronkova, M., Kubasek, J., Kucerova, B., Vachova, I., Pop, S., Marsik, P., Macho, M., Fojtikova, P., Rychla, A., Hejna, O., Kulich, I., Wrzaczek, M., Janda, M.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.23.639761

Model Organism: Papaver somniferum

Pattern‑triggered immunity flg22 reactive oxygen species MAPK phosphorylation Papaver somniferum

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