Keywords: decoding modules, cotyledon function, transcriptome profiling, multi-omics

Latest 13 Papers

Gene networks associated with early endosperm proliferation and basal endosperm layer differentiation in maize

Authors: Zhang, S., Ran, D., Ryu, C.-H., Li, G., Dannenhoffer, J. M., Wang, X., Drews, G. N., Yadegari, R.

Date: 2026-01-02 · Version: 1

DOI: 10.64898/2025.12.31.697219

Model Organism: Zea mays

maize endosperm development transcriptome profiling co‑expression network MYB-related transcription factors TOR signaling

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

Unraveling synergistic and antagonistic effects of simultaneous versus single hypoxia-salt conditions in an evolutionary adapted plant species

Authors: Jordine, A., Alt, J., van Dongen, J. T., Fuertauer, L.

Date: 2025-10-10 · Version: 1

DOI: 10.1101/2025.10.09.681434

Model Organism: Salicornia europaea

combined hypoxia-salt stress Salicornia europaea transcriptome profiling synergistic vs antagonistic gene regulation carbohydrate and amino acid metabolism

The complex molecular basis of enhanced stress resilience in extreme drought-tolerant Arabis grassland species

Authors: Khan, A. S., Zumkeller, S. M., Schmitz, G., Calic, I., Ali, T., Rahnamae, N., Hoerdemann, L., Abdelwahed, L., Szymanski, J. J., de Meaux, J.

Date: 2025-10-02 · Version: 1

DOI: 10.1101/2025.10.02.680103

Model Organism: Arabis nemorensis

drought resilience polygenic regulation transcriptome profiling small RNA (miR408)cis‑regulatory motifs

Predicting complex phenotypes using multi-omics data in maize

Authors: Creach, M., Webster, B., Newton, L., Turkus, J., Schnable, J., Thompson, A., VanBuren, R.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.30.679283

Model Organism: Zea mays

multi-omics trait prediction transcriptomics phenomics genotype-by-environment interaction

AMF primes immune genes against Puccinia hordei (Brown rust) in Hordeum vulgare but does not reduce pathogen burden

Authors: Moulton-Brown, C. E., Brzezinska, K., Orosa-Puente, B. E., Helgason, T.

Date: 2025-09-17 · Version: 1

DOI: 10.1101/2025.09.16.676302

Model Organism: Hordeum vulgare

Barley (Hordeum vulgare)Rhizophagus irregularis Puccinia hordei mycorrhiza‑induced resistance transcriptome profiling

Pioneer bark beetle attacks induce multifaceted localized defense responses in Norway spruce

Authors: Ramires, M. J., Netherer, S., Schebeck, M., Hummel, K., Schlosser, S., Razzazi-Fazeli, E., Ertl, R., Ahmad, M., Espinosa-Ruiz, A., Carrera, E., Arc, E., Martinez-Godoy, M. A., Banos, J., Caballero, T., Ledermann, T., van Loo, M., Trujillo-Moya, C.

Date: 2025-08-07 · Version: 1

DOI: 10.1101/2025.08.06.668443

Model Organism: Picea abies

Norway spruce bark beetle defense multi-omics jasmonic acid phenolic compounds

Virus-induced upregulation of mitochondrial metabolism modulates cytosolic redox balance and defense responses

Authors: Hou, L.-Y., Wu, C.-H., Lin, N.-S.

Date: 2025-07-06 · Version: 1

DOI: 10.1101/2025.07.05.663277

Model Organism: Nicotiana benthamiana

metabolic reprogramming Bamboo mosaic virus mitochondrial metabolism redox balance multi-omics

Multi-Omics Analysis of Heat Stress-Induced Memory in Arabidopsis

Authors: Thirumlaikumar, V. P. P., Yu, L., Arora, D., Mubeen, U., Wisniewski, A., Walther, D., Giavalisco, P., Alseekh, S., DL Nelson, A., Skirycz, A., Balazadeh, S.

Date: 2025-06-23 · Version: 1

DOI: 10.1101/2025.06.19.660594

Model Organism: Arabidopsis thaliana

heat stress acquired thermotolerance heat stress memory multi-omics Arabidopsis thaliana

Molecular and Phenotypic Characterization of Telomere Repeat Binding (TRBs) Proteins in Moss: Evolutionary and Functional Perspectives

Authors: Kusova, A., Hola, M., Goffova Petrova, I., Rudolf, J., Zachova, D., Skalak, J., Hejatko, J., Klodova, B., Prerovska, T., Lycka, M., Sykorova, E., Bertrand, Y. J. K., Fajkus, J., Honys, D., Prochazkova Schrumpfova, P.

Date: 2025-06-17 · Version: 1

DOI: 10.1101/2025.06.11.659030

Model Organism: Physcomitrium patens

Telomere repeat binding proteins Physcomitrium patens knockout mutants telomere maintenance transcriptome profiling

Page 1 of 2Next