Keywords: decoding modules, root development, QTL mapping, SNP array, DNA methylation

Latest 38 Papers

Integrative epigenomic analysis uncovers asymmetry of enhancer activity in Brassica napus

Authors: Zanini, S. F., Rockenbach, K., Nguyen, A., Arslan, K., Yildiz, G., Snowdon, R., Golicz, A. A.

Date: 2025-10-31 · Version: 1

DOI: 10.1101/2025.10.31.685802

cis-regulatory elements super-enhancers Brassica napus chromatin accessibility DNA methylation

DNA methylome responses to biotic and abiotic stress in Arabidopsis thaliana: A multi-study analysis

Authors: Behl, R., Gallo-Franco, J. J., Hazarika, R. R., Zhang, Z., Wilming, F., Schnitzler, J.-P., Lindermayr, C., Johannes, F.

Date: 2025-10-20 · Version: 1

DOI: 10.1101/2025.10.20.682861

Model Organism: Arabidopsis thaliana

DNA methylation stress response Arabidopsis thaliana transposable elements epimutations

Drought-Induced Epigenetic Memory in the cambium of Poplar Trees persists and primes future stress responses

Authors: DUPLAN, A., FENG, Y. Q., LASKAR, G., CAI, B. D., SEGURA, V., DELAUNAY, A., LE JAN, I., DAVIAUD, C., TOUMI, A., LAURANS, F., SOW, M. D., ROGIER, O., POURSAT, P., DURUFLE, H., JORGE, V., SANCHEZ, L., COCHARD, H., ALLONA, I., TOST, J., FICHOT, R., MAURY, S.

Date: 2025-10-15 · Version: 1

DOI: 10.1101/2025.10.14.681991

Model Organism: Populus spp.

drought stress memory DNA methylation Populus cambium epigenetic priming

Novel substrate affinity of FaCCR1 and FaCCR1/FaOCT4 expression control the content of medium-chain esters in strawberry fruit

Authors: Roldan-Guerra, F. J., Amorim-Silva, V., Jimenez, J., Mari-Albert, A., Torreblanca, R., Ruiz del Rio, J., Botella, M. A., Granell, A., Sanchez-Sevilla, J. F., Castillejo, C., Amaya, I.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.30.679181

Model Organism: Fragaria × ananassa

volatile organic compounds medium-chain esters QTL mapping FaCCR1 FaOCT4

A century of breeding has preserved genetic variation, accumulated favorable alleles, and shaped the Rht gene portfolio in North American spring wheat

Authors: Gill, H. S., Blecha, S., Conley, E., Brault, C., Fiedler, J., Cook, J., Glover, K., Green, A., Read, A. C., Anderson, J. A.

Date: 2025-09-23 · Version: 1

DOI: 10.1101/2025.09.22.677111

Model Organism: Triticum aestivum

Hard red spring wheat genetic diversity Rht dwarfing genes SNP array KASP genotyping

Major alleles of CDCA7α shape CG-methylation in Arabidopsis thaliana

Authors: Bourguet, P., Lorkovic, Z. J., Casado, D. K., Bapteste, V., Cho, C. H., Igolkina, A., Lee, C.-R., Nordborg, M., Berger, F., Sasaki, E.

Date: 2025-09-07 · Version: 1

DOI: 10.1101/2025.09.03.673934

Model Organism: Arabidopsis thaliana

DNA methylation CG methylation (mCG)CDCA7 DDM1 local adaptation

QTL mapping of oat crown rust resistance in Australian fields and identification of a seedling resistance locus in oat line GS7

Authors: Nguyen, D., Lewis, D., Henningsen, E., Su, Z., Mago, R., Sperschneider, J., Dodds, P., Rattey, A., Yimer, B., Klos, K., Figueroa, M.

Date: 2025-08-27 · Version: 1

DOI: 10.1101/2025.08.24.671654

Model Organism: Avena sativa

crown rust Puccinia coronata QTL mapping KASP markers Pc61

DECREASE IN DNA METHYLATION 1-mediated epigenetic regulation maintains gene expression balance required for heterosis in Arabidopsis thaliana

Authors: Matsuo, K., Wu, R., Yonechi, H., Murakami, T., Takahashi, S., Kamio, A., Akter, M. A., Kamiya, Y., Nishimura, K., Matsuura, T., Tonosaki, K., Shimizu, M., Ikeda, Y., Kobayashi, H., Seki, M., Dennis, E. S., Fujimoto, R.

Date: 2025-08-26 · Version: 1

DOI: 10.1101/2025.08.21.671646

Model Organism: Arabidopsis thaliana

heterosis DNA methylation DDM1 Arabidopsis thaliana transcriptomics

Esca Disease triggers local transcriptomic response and systemic DNA methylation changes in grapevine

Authors: Berger, M. M. J., Garcia, V., Rubio, B., Bortolami, G., Gambetta, G., Delmas, C. E. L., Gallusci, P.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.11.669596

Model Organism: Vitis vinifera

Esca Vitis vinifera metabolite profiling RNA‑seq DNA methylation

The Arabidopsis GyraseB3 contributes to transposon silencing by promoting histone deacetylation

Authors: Gy, I., Beaubiat, S., Bouche, N.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.11.669681

Model Organism: Arabidopsis thaliana

DNA methylation histone demethylase IBM1 GyrB3 transposable element silencing histone deacetylase HDA6

PreviousPage 2 of 4Next