Keywords: decoding modules, spatial transcriptomics, metabarcoding, RNA-Seq

Latest 16 Papers

Imputation integrates single-cell and spatial gene expression data to resolve transcriptional networks in barley shoot meristem development

Authors: Demesa-Arevalo, E., Dorpholz, H., Vardanega, I., Maika, J. E., Pineda-Valentino, I., Eggels, S., Lautwein, T., Kohrer, K., Schnurbusch, T., von Korff, M., Usadel, B., Simon, R.

Date: 2025-05-11 · Version: 1

DOI: 10.1101/2025.05.09.653223

Model Organism: Hordeum vulgare

Barley (Hordeum vulgare)inflorescence meristems single-cell RNA sequencing spatial transcriptomics developmental gene regulation

Identification of immune response genes of cassava during early phases of cassava brown streak virus infection

Authors: Sheat, S., Winter, S., Lillenthal, J., Pucker, B.

Date: 2025-05-03 · Version: 1

DOI: 10.1101/2025.04.29.651173

Model Organism: Manihot esculenta

Cassava brown streak disease CBSV/UCBSV RNA-Seq differential gene expression virus resistance

Ethylene and ROS Signaling Are Key Regulators of Lateral Root Development under Salt Stress in Tomato

Authors: Rahmati Ishka, M., Zhao, J., Sussman, H., Mohanty, D., Craft, E., Yu, L., Pineros, M., Tester, M., Kawa, D., Mittler, R., Nelson, A., Fei, Z., Julkowska, M. M.

Date: 2025-04-15 · Version: 2

DOI: 10.1101/2024.06.20.599848

Model Organism: Solanum lycopersicum

root system architecture salt stress GWAS bulk segregant analysis RNA-Seq

Structure-activity relationships of coumarin and its analogs and mechanistic insights into germination inhibition by coumarin

Authors: Fukuda, K., Hyakutake, S., Oishi, T., Yoshida, M., Koga, M., Egami, C., Matsura, H., Ito, R., Tsukahara, K., Noda, M., Tomonaga, K., Chifu, K., Ichimaru, R., Fujito, E., Mori, K., Tokuyama, Y., Yoshida, T., Ryuda, N., Nagano, Y., Matsutaka, K.

Date: 2025-03-28 · Version: 2

DOI: 10.1101/2024.05.23.595645

Model Organism: Arabidopsis thaliana

coumarin germination inhibition structure-activity relationship expansin genes RNA-Seq

The Ustilago maydis transcription factor Nit2 regulates nitrate utilization during biotrophy and influences organic nitrogen metabolism in infected maize leaves under nitrogen limitation

Authors: Lopinski, P. L., Schulz, C., Fischer, A., Reichl, N., Engelsdorf, T., Braun, N., Voll, L. M.

Date: 2025-02-17 · Version: 2

DOI: 10.1101/2025.01.02.631094

Model Organism: Ustilago maydis

Nit2 transcription factor Ustilago maydis nitrogen metabolism RNA-Seq biotrophic infection

Diverse Pseudomonas species engage in beneficial and suppressive interactions with the kiwifruit pathogen Psa across Actinidia germplasm

Authors: Patterson, H. R., Hemara, L. M., Templeton, M. D., Jayaraman, J.

Date: 2025-02-03 · Version: 1

DOI: 10.1101/2025.01.31.635981

Model Organism: Actinidia chinensis

Pseudomonas syringae pv. actinidiae Actinidia chinensis metabarcoding qPCR detection pathogenic bacterial consortia

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