Keywords: decoding modules, structural variants, ascorbate, Marchantia polymorpha

Latest 28 Papers

The avocado pangenome reveals dynamic clustering and lineage-specific diversity of NLR genes

Authors: Backer, R., Clarke, A., Vermeulen, A., Bombarely, A., van den Berg, N.

Date: 2025-10-28 · Version: 1

DOI: 10.1101/2025.10.28.684993

Model Organism: Persea americana

avocado pangenome NLR immune genes structural variants disease resistance

A Key Role for S-Nitrosylation in Immune Regulation and Development in the Liverwort Marchantia polymorpha

Authors: Goodrich, J.

Date: 2025-09-30 · Version: 1

DOI: 10.1101/2025.09.29.679193

Model Organism: Marchantia polymorpha

Nitric oxide S-nitrosylation GSNOR Marchantia polymorpha plant immunity

Diversification of functional requirements for proteolysis of Auxin Response Factors

Authors: de Roij, M., Heijdra, E., Nishihama, R., Borst, J. W., Weijers, D.

Date: 2025-09-04 · Version: 1

DOI: 10.1101/2025.09.03.673984

Model Organism: Marchantia polymorpha

Auxin signaling ARF transcription factors Proteasomal degradation Marchantia polymorpha A‑class/B‑class ARFs

Population-level super-pangenome reveals genome evolution and empowers precision breeding in watermelon

Authors: Sun, H., Zhang, J., Liao, S., Guo, S., Zhou, Z., Zhao, X., Wu, S., Zhao, J., Gong, G., Wang, J., Li, M., Yu, Y., Ren, Y., Tian, S., Li, S., Zhang, H., Hammar, S. A., McGregor, C., Jarret, R., Wechter, P., Branham, S. E., Kousik, C., Levi, A., Grumet, R., Xu, Y., Fei, Z.

Date: 2025-07-27 · Version: 1

DOI: 10.1101/2025.07.25.666869

Model Organism: Citrullus lanatus (watermelon)

watermelon super-pangenome structural variants genome-wide association study copy number variation genomic prediction

Graph pangenome reveals structural variation dynamics during cucumber breeding

Authors: Zhao, X., Yu, J., Zhang, J., Sun, H., Wu, S., Zhao, J., Zhou, Y., Hammar, S., Lin, Y.-C., Zhang, Z., Huang, S., Dymerski, R., Chen, F., Weng, Y., Grumet, R., Xu, Y., Fei, Z.

Date: 2025-07-21 · Version: 1

DOI: 10.1101/2025.07.17.665377

Model Organism: Cucumis sativus

structural variants graph pangenome cucumber domestication genomic prediction purifying selection

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Modulation of the GT Family 47 clade B gene affects arabinan deposition in elaters of Marchantia polymorpha

Authors: Kang, H. S. F., Lampugnani, E. R., Tong, X., Prabhakar, P. K., Flores-Sandoval, E., Hansen, J., Jorgensen, B., Bowman, J. L., Urbanowicz, B. R., Ebert, B., Persson, S.

Date: 2025-05-03 · Version: 1

DOI: 10.1101/2025.05.02.651808

Model Organism: Marchantia polymorpha

GT47B arabinosyltransferase 1,5‑linked arabinan Marchantia polymorpha cell wall composition CoMPP

The Building Blocks of Early Land Plants: Glycosyltransferases and Cell Wall Architecture in the model liverwort Marchantia polymorpha

Authors: Kang, H. S. F., Tong, X., Mariette, A., Leong, M., Beahan, C., Flores-Sandoval, E., Pedersen, G., Rautengarten, C., Bowman, J. L., Ebert, B., Bacic, A., Doblin, M., Persson, S., Lampugnani, E. R.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.30.651426

Model Organism: Marchantia polymorpha

Marchantia polymorpha cell wall polysaccharides arabinan glycosyltransferase families comparative genomics

The MpCAFA gene encodes a ciliary protein required for spermatozoid motility in the liverwort Marchantia polymorpha

Authors: MORITA, M., Yamato, K. T.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.26.650577

Model Organism: Marchantia polymorpha

MpCAFA ciliary motility spermatozoid Marchantia polymorpha CAPS/FAP115 domains

The cytochrome P450 enzyme MpCYP78E1 inhibits meristem initiation and activity in Marchantia polymorpha

Authors: Spencer, V., Casey, C., Mosiolek, M., Jandrasits, K., Edelbacher, N., Dolan, L.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.28.651025

Model Organism: Marchantia polymorpha

Marchantia polymorpha meristem activity MpCYP78E1 RNA‑seq branching regulation

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