Keywords: decoding modules, structural variation, ascorbate, bread wheat

Latest 9 Papers

Root phenolics as potential drivers of preformed defenses and reduced disease susceptibility in a paradigm bread wheat mixture

Authors: Mathieu, L., Chloup, A., Marty, S., Savajols, J., Paysant-Le Roux, C., Launay-Avon, A., Martin, M.-L., Totozafy, J.-C., Perreau, F., Rochepeau, A., Rouveyrol, C., Petriacq, P., Morel, J.-B., Meteignier, L.-V., Ballini, E.

Date: 2026-01-14 · Version: 1

DOI: 10.64898/2026.01.13.699261

Model Organism: Triticum aestivum

root-mediated interactions bread wheat Septoria tritici blotch transcriptomics metabolomics

A dual genomic-epigenomic map of clonal evolution in grapevine

Authors: Callipo, P., Robinson, H., Schmidt, M., Voss-Fels, K. P.

Date: 2026-01-09 · Version: 1

DOI: 10.64898/2026.01.09.698625

Model Organism: Vitis vinifera

Vitis vinifera clonal genetic variation structural variation CG DNA methylation Oxford Nanopore sequencing

Chromosome-scale Solanum pennellii and Solanum cheesmaniae genome assemblies reveal structural variants, repeat content and recombination barriers of the tomato clade

Authors: van Rengs, W., Fuentes, R. R., Zangishei, Z., Primetis, E., Wang, Y., Fernandes, J., Susanto, T., Lian, Q., Effgen, S., Huettel, B., Alseekh, S., Usadel, B., Underwood, C. J.

Date: 2025-12-20 · Version: 1

DOI: 10.64898/2025.12.19.695418

Model Organism: Solanum lycopersicum

chromosome-scale genome assembly Solanum pennellii Solanum cheesmaniae structural variation recombination landscape

Genomic Structural Variation Underlies Cell-Type-Specific Betacyanin Variegation in Chenopodium quinoa

Authors: Zhang, Z., Wang, Y., Hu, X., Yu, T., Feng, Y., Zhang, J., Zhang, T., Feng, G., Zhang, H.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694152

Model Organism: Chenopodium quinoa

betacyanin biosynthesis CYP76AD epidermal bladder cells structural variation subgenome specialization

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

Chromosome-scale haplotype genome assemblies for the Australian mango 'Kensington Pride' 1 and a wild relative, Mangifera laurina, provide insights into anthracnose-resistance and volatile 2 compound biosynthesis genes

Authors: Wijesundara, U. K., Furtado, A., Masouleh, A., Dillon, N. L., Smyth, H., Henry, R. J.

Date: 2025-11-27 · Version: 1

DOI: 10.1101/2025.11.24.690335

Model Organism: Mangifera indica

Mangifera indica PacBio HiFi genome assembly anthracnose resistance structural variation carotenoid and terpenoid biosynthesis

Controlling GRF4-GIF1 Expression for Efficient, Genotype-Independent Transformation Across Wheat Cultivars

Authors: Hayta, S., Smedley, M. A., Bayraktar, M., Forner, M., Backhaus, A., Lister, C., Clarke, M., Uauy, C., Griffiths, S.

Date: 2025-09-02 · Version: 1

DOI: 10.1101/2025.08.29.673042

Model Organism: Triticum aestivum

GRF4‑GIF1 fusion Agrobacterium-mediated transformation genotype‑independent regeneration bread wheat transformation efficiency

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

A simple method to efficiently generate structural variation in plants

Authors: Bechen, L. L., Ahsan, N., Bahrainwala, A., Gehring, M., Rajavasireddy, S.

Date: 2025-05-14 · Version: 2

DOI: 10.1101/2024.12.20.629831

Model Organism: Arabidopsis thaliana

structural variation etoposide treatment Arabidopsis thaliana long‑read sequencing phenotypic alteration